RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSMAMG00000006239	Gene ID	113132977	Accession	-
Symbol	dennd4a	Alias	-	Full Name	DENN/MADD domain containing 4A
Status	Confidence	Length	21576 bases	Strand	Plus strand
Position	6 : 9669606 - 9691181	RNA binding domain	PPR_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSMAMP00000047501	PPR_3	PF13812	2.9e-05	1
ENSMAMP00000040169	PPR_3	PF13812	3e-05	1
ENSMAMP00000062147	PPR_3	PF13812	3.1e-05	1
ENSMAMP00000068341	PPR_3	PF13812	3.2e-05	1
ENSMAMP00000037175	PPR_3	PF13812	3.2e-05	1
ENSMAMP00000055844	PPR_3	PF13812	3.2e-05	1
ENSMAMP00000009374	PPR_3	PF13812	3.3e-05	1
ENSMAMP00000009312	PPR_3	PF13812	3.3e-05	1
ENSMAMP00000045815	PPR_3	PF13812	3.4e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSMAMT00000055281	6713	1724aa	ENSMAMP00000045815
-	ENSMAMT00000009560	6692	1717aa	ENSMAMP00000009312
-	ENSMAMT00000009621	6614	1690aa	ENSMAMP00000009374
-	ENSMAMT00000048290	6575	1677aa	ENSMAMP00000055844
-	ENSMAMT00000063237	6557	1672aa	ENSMAMP00000068341
-	ENSMAMT00000069367	6545	1667aa	ENSMAMP00000037175
-	ENSMAMT00000041196	6437	1632aa	ENSMAMP00000062147
-	ENSMAMT00000069705	6380	1613aa	ENSMAMP00000040169
-	ENSMAMT00000063154	6209	1556aa	ENSMAMP00000047501

Gene Model

Click here to download ENSMAMG00000006239's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSMAMG00000006239's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000024790	64.7059	55.4128	mastacembelus_armatus	ENSMAMP00000045815	75.9281	65.0232
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000008892	55.9833	42.924	mastacembelus_armatus	ENSMAMP00000045815	62.413	47.8538
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000027118	56.0976	41.2758	mastacembelus_armatus	ENSMAMP00000045815	34.6868	25.522
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000016633	31.6863	15.5294	mastacembelus_armatus	ENSMAMP00000045815	23.4339	11.4849
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000022668	31.6165	16.4818	mastacembelus_armatus	ENSMAMP00000045815	23.1439	12.065

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	11.0789	10.6729	fundulus_heteroclitus	ENSFHEP00000004314	95.5	92
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.5731	82.7726	xiphophorus_maculatus	ENSXMAP00000024429	90.6231	84.6884
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.3271	83.4687	poecilia_reticulata	ENSPREP00000015280	91.3947	85.4006
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	86.4849	81.2065	oryzias_latipes	ENSORLP00000032270	87.7059	82.3529
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	91.5893	87.297	haplochromis_burtoni	ENSHBUP00000011485	92.4473	88.1148
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.051	83.7587	cyclopterus_lumpus	ENSCLMP00005000450	92.3358	87.8345
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	91.5313	87.529	oreochromis_niloticus	ENSONIP00000019404	92.5513	88.5044
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	91.4733	87.355	astatotilapia_calliptera	ENSACLP00000023492	92.4385	88.2767
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	94.0835	90.4872	sparus_aurata	ENSSAUP00010021495	94.3572	90.7504
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	95.3596	91.8793	dicentrarchus_labrax	ENSDLAP00005008654	94.3743	90.93
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.2251	83.4107	oryzias_melastigma	ENSOMEP00000019693	90.7518	85.7995
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.051	82.7146	cyprinodon_variegatus	ENSCVAP00000016594	90.411	84.9315
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.0951	85.7309	lates_calcarifer	ENSLCAP00010025071	90.673	87.2491
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.7912	85.0928	kryptolebias_marmoratus	ENSKMAP00000026080	91.8149	87.0107
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.6752	84.6868	takifugu_rubripes	ENSTRUP00000077331	90.8343	85.7814
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	95.1276	91.6473	seriola_dumerili	ENSSDUP00000011240	94.579	91.1188
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.0371	85.2088	neolamprologus_brichardi	ENSNBRP00000021577	92.4699	88.494
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	86.891	81.6125	poecilia_latipinna	ENSPLAP00000014366	91.5648	86.0024
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.9211	83.3527	poecilia_formosa	ENSPFOP00000007517	90.9792	85.2819
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	93.5615	89.5592	scophthalmus_maximus	ENSSMAP00000024285	91.0785	87.1824
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.3851	85.3828	labrus_bergylta	ENSLBEP00000020784	93.6209	89.4289
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.3851	85.8469	amphilophus_citrinellus	ENSACIP00000004616	93.3374	89.6426
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	86.4849	82.8886	anabas_testudineus	ENSATEP00000065851	90.1996	86.4489
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	94.7796	90.3712	cottoperca_gobio	ENSCGOP00000026768	94.4509	90.0578
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	75.116	70.4756	tetraodon_nigroviridis	ENSTNIP00000011260	85.9323	80.6238
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	84.1067	78.5383	hippocampus_comes	ENSHCOP00000011527	91.0232	84.9969
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	93.6195	90.2552	amphiprion_ocellaris	ENSAOCP00000028006	93.511	90.1506
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	87.529	82.9466	gasterosteus_aculeatus	ENSGACP00000006444	83.8333	79.4444
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.2691	86.2529	amphiprion_percula	ENSAPEP00000029061	94.4751	91.283
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.6311	83.5847	oryzias_javanicus	ENSOJAP00000029341	88.5284	83.4878
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.4432	84.3968	nothobranchius_furzeri	ENSNFUP00015018086	91.6766	86.5042
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.3271	85.4988	pundamilia_nyererei	ENSPNYP00000018186	92.3261	88.3693
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	88.9211	83.5847	cynoglossus_semilaevis	ENSCSEP00000010540	88.7666	83.4395
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.2111	84.5128	sander_lucioperca	ENSSLUP00000043076	89.2629	84.5618
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	94.1415	90.1972	larimichthys_crocea	ENSLCRP00005024859	94.5253	90.5649
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	84.8608	79.4664	oryzias_sinensis	ENSOSIP00000046746	89.8097	84.1007
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	87.297	82.8886	betta_splendens	ENSBSLP00000030778	89.53	85.0089
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	93.0394	89.8492	stegastes_partitus	ENSSPAP00000025000	93.2016	90.0058
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	91.4733	87.297	maylandia_zebra	ENSMZEP00005030373	92.4385	88.2181
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	89.7332	86.949	acanthochromis_polyacanthus	ENSAPOP00000025208	94.0998	91.18
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	91.6473	88.6311	seriola_lalandi_dorsalis	ENSSLDP00000030869	95.7576	92.6061
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	7.77262	5.16241	ciona_intestinalis	ENSCINP00000030085	42.9487	28.5256
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	6.90255	5.33643	callorhinchus_milii	ENSCMIP00000003645	64.6739	50
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	82.8306	73.4339	esox_lucius	ENSELUP00000047785	65.9584	58.4757
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	82.3086	73.4919	oncorhynchus_kisutch	ENSOKIP00005044775	60.5117	54.0299
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	78.1903	69.8956	oncorhynchus_mykiss	ENSOMYP00000112239	80.9124	72.3289
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	82.7146	73.8399	salmo_salar	ENSSSAP00000021133	73.2409	65.3826
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	82.8306	73.5499	salmo_trutta	ENSSTUP00000034440	71.5789	63.5589
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	84.9768	77.7842	gadus_morhua	ENSGMOP00000034270	82.4423	75.4643
ENSMAMG00000006239	mastacembelus_armatus	ENSMAMP00000045815	87.761	84.3387	myripristis_murdjan	ENSMMDP00005020775	91.2545	87.696

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression