RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSLOCG00000016390	Gene ID		Accession	-
Symbol	lrpprc	Alias	-	Full Name	leucine-rich pentatricopeptide repeat containing
Status	Confidence	Length	73681 bases	Strand	Plus strand
Position	LG16 : 13446663 - 13520343	RNA binding domain	PPR_3 , PPR_long , PPR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSLOCP00000020256	PPR_3	PF13812	1.6e-31	1
ENSLOCP00000020256	PPR_3	PF13812	1.6e-31	2
ENSLOCP00000020256	PPR_3	PF13812	1.6e-31	3
ENSLOCP00000020256	PPR_3	PF13812	1.6e-31	4
ENSLOCP00000020256	PPR_long	PF17177	9.8e-27	5
ENSLOCP00000020256	PPR	PF01535	2.9e-33	6
ENSLOCP00000020256	PPR	PF01535	2.9e-33	7
ENSLOCP00000020256	PPR	PF01535	2.9e-33	8
ENSLOCP00000020256	PPR	PF01535	2.9e-33	9

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
lrpprc-201	ENSLOCT00000020290	5324	1473aa	ENSLOCP00000020256

Gene Model

Click here to download ENSLOCG00000016390's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSLOCG00000016390's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000016390

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	60.8282	43.9919	petromyzon_marinus	ENSPMAP00000002368	68.1887	49.3151
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	16.5648	11.5411	eptatretus_burgeri	ENSEBUP00000025786	63.0491	43.9277
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	78.6151	64.5621	latimeria_chalumnae	ENSLACP00000015933	80.9224	66.457
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.4189	55.6008	mustela_putorius_furo	ENSMPUP00000011706	75.3042	58.6256
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	72.3014	55.1256	cercocebus_atys	ENSCATP00000003773	72.8953	55.5784
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	70.8758	54.3109	echinops_telfairi	ENSETEP00000005410	74.9462	57.43
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.8941	54.9898	macaca_nemestrina	ENSMNEP00000015080	75.8053	57.9814
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	69.1786	54.3788	astatotilapia_calliptera	ENSACLP00000035182	77.9052	61.2385
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	57.7054	44.3992	choloepus_hoffmanni	ENSCHOP00000003231	61.2833	47.1521
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.6225	54.7183	dasypus_novemcinctus	ENSDNOP00000009798	75.8447	57.9439
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	48.6762	34.759	dasypus_novemcinctus	ENSDNOP00000020662	67.3239	48.0751
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	73.5913	56.3476	danio_rerio	ENSDARP00000111776	74.1958	56.8104
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	60.6246	45.8248	ochotona_princeps	ENSOPRP00000015336	64.5231	48.7717
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	73.2519	58.3843	fundulus_heteroclitus	ENSFHEP00000017838	75.9324	60.5208
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	51.0523	39.3754	erinaceus_europaeus	ENSEEUP00000011323	58.4759	45.1011
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	27.0876	21.928	oryzias_melastigma	ENSOMEP00000028638	77.6265	62.8405
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	52.4779	40.4616	procavia_capensis	ENSPCAP00000001447	56.2591	43.377
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	70.5363	53.632	otolemur_garnettii	ENSOGAP00000011476	74.5872	56.7121
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	60.0136	46.5037	sorex_araneus	ENSSARP00000000394	75.234	58.2979
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	47.5221	36.3883	pelodiscus_sinensis	ENSPSIP00000007632	80.6452	61.7512
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	11.7447	9.91175	pelodiscus_sinensis	ENSPSIP00000017651	73.9316	62.3932
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	69.7217	54.5146	tursiops_truncatus	ENSTTRP00000006060	73.7258	57.6454
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.8262	56.0081	capra_hircus	ENSCHIP00000022836	76.0604	59.3098
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	69.4501	53.3605	chinchilla_lanigera	ENSCLAP00000007399	73.2808	56.3037
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	66.1236	51.4596	vicugna_pacos	ENSVPAP00000008367	72.6324	56.525
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.6225	56.3476	oryzias_latipes	ENSORLP00000005797	73.3658	57.7191
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.2152	55.6008	panthera_tigris_altaica	ENSPTIP00000000544	75.2511	58.7518
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.8941	55.6687	myotis_lucifugus	ENSMLUP00000009670	75.914	58.7814
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.1473	53.7678	cricetulus_griseus_chok1gshd	ENSCGRP00001015743	75.2874	56.8966
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	75.2885	59.4705	cyprinodon_variegatus	ENSCVAP00000026988	78.0436	61.6467
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	73.3876	58.52	xiphophorus_maculatus	ENSXMAP00000018156	76.3958	60.9187
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	66.3951	52.3422	neolamprologus_brichardi	ENSNBRP00000017258	81.1618	63.9834
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.8941	54.9898	microtus_ochrogaster	ENSMOCP00000006424	76.0776	58.1897
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	69.3143	52.8174	loxodonta_africana	ENSLAFP00000019681	72.8765	55.5318
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	24.5757	10.8622	saccharomyces_cerevisiae	YLR067C	37.513	16.5803
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	72.3693	56.3476	amphiprion_percula	ENSAPEP00000004420	77.3585	60.2322
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	76.85	60.5567	maylandia_zebra	ENSMZEP00005036721	79.1055	62.334
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	68.7712	53.021	pteropus_vampyrus	ENSPVAP00000001898	72.6686	56.0258
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	72.1656	54.7862	chlorocebus_sabaeus	ENSCSAP00000009186	76.0372	57.7253
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	72.7088	57.0265	tetraodon_nigroviridis	ENSTNIP00000010279	77.665	60.9137
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.8262	56.4834	amphilophus_citrinellus	ENSACIP00000012395	78.8376	61.997
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	70.2648	54.7862	pundamilia_nyererei	ENSPNYP00000001107	77.1237	60.1341
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	62.3897	46.6395	cavia_porcellus	ENSCPOP00000000178	76.3923	57.1072
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	71.6904	54.7183	stegastes_partitus	ENSSPAP00000000169	73.2316	55.8946
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	70.4005	53.3605	nomascus_leucogenys	ENSNLEP00000020435	75.1994	56.9978
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	75.8995	59.2668	amphiprion_ocellaris	ENSAOCP00000002732	78.2365	61.0917
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	72.5051	55.5329	ictidomys_tridecemlineatus	ENSSTOP00000029316	74.529	57.083
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	73.1161	56.8228	gasterosteus_aculeatus	ENSGACP00000014169	77.3151	60.0861
ENSLOCG00000016390	lepisosteus_oculatus	ENSLOCP00000020256	73.795	58.3843	poecilia_formosa	ENSPFOP00000011667	76.983	60.9065

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression