RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSLOCG00000013054	Gene ID	102696900	Accession	-
Symbol		Alias	-	Full Name	methyl-CpG binding domain 4, DNA glycosylase
Status	Confidence	Length	5270 bases	Strand	Plus strand
Position	LG5 : 40484317 - 40489586	RNA binding domain	MBD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSLOCP00000016075	MBD	PF01429	2e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSLOCT00000016105	2711	497aa	ENSLOCP00000016075

Gene Model

Click here to download ENSLOCG00000013054's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSLOCG00000013054's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000013054	lepisosteus_oculatus	ENSLOCP00000018131	23.6473	14.4289	lepisosteus_oculatus	ENSLOCP00000016075	23.7425	14.4869

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000013054	lepisosteus_oculatus	ENSLOCP00000016075	50.503	36.4185	callorhinchus_milii	ENSCMIP00000000281	44.9821	32.4373
ENSLOCG00000013054	lepisosteus_oculatus	ENSLOCP00000016075	46.4789	35.8149	latimeria_chalumnae	ENSLACP00000015348	52.7397	40.6393
ENSLOCG00000013054	lepisosteus_oculatus	ENSLOCP00000016075	24.3461	20.1207	ciona_savignyi	ENSCSAVP00000001836	67.5978	55.8659

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression