RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSLOCG00000003219	Gene ID	102689142	Accession	-
Symbol	srrm4	Alias	-	Full Name	serine/arginine repetitive matrix 4
Status	Confidence	Length	62890 bases	Strand	Minus strand
Position	LG20 : 4283896 - 4346785	RNA binding domain	SRRM_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSLOCP00000003803	SRRM_C	PF15230	9.1e-24	1
ENSLOCP00000003824	SRRM_C	PF15230	7.1e-23	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSLOCT00000003810	4732	614aa	ENSLOCP00000003803
-	ENSLOCT00000003831	4717	609aa	ENSLOCP00000003824

Gene Model

Click here to download ENSLOCG00000003219's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSLOCG00000003219's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000003219

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	63.355	50.8143	oreochromis_niloticus	ENSONIP00000013265	62.3397	50
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	41.0423	33.7134	poecilia_reticulata	ENSPREP00000006603	60.4317	49.6403
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	48.3713	37.785	gadus_morhua	ENSGMOP00000007184	57.4468	44.8743
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	60.5863	50.3257	salmo_trutta	ENSSTUP00000076578	63.4812	52.7304
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.2769	36.4821	salmo_trutta	ENSSTUP00000027979	60.1732	48.4848
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	56.5147	46.5798	astyanax_mexicanus	ENSAMXP00000033222	59.8276	49.3103
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.9283	36.3192	oncorhynchus_kisutch	ENSOKIP00005092703	61.1714	48.3731
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	37.6222	28.1759	oncorhynchus_kisutch	ENSOKIP00005006434	50.9934	38.1898
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	47.557	36.8078	esox_lucius	ENSELUP00000028407	58.871	45.5645
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	46.5798	35.342	cyclopterus_lumpus	ENSCLMP00005035412	58.7269	44.5585
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	62.3778	49.8371	haplochromis_burtoni	ENSHBUP00000008998	62.5817	50
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.7655	36.1564	astatotilapia_calliptera	ENSACLP00000034761	64.0091	50.5695
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.9837	53.7459	sparus_aurata	ENSSAUP00010048696	63.9423	52.8846
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	60.0977	46.9055	carassius_auratus	ENSCARP00000091174	64.3979	50.2618
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	58.7948	46.5798	carassius_auratus	ENSCARP00000011518	62.1343	49.2255
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	33.8762	24.9186	electrophorus_electricus	ENSEEEP00000023761	53.3333	39.2308
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	57.8176	46.9055	danio_rerio	ENSDARP00000136286	61.8467	50.1742
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	58.6319	45.9283	takifugu_rubripes	ENSTRUP00000078360	62.069	48.6207
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	34.6906	26.3844	fundulus_heteroclitus	ENSFHEP00000004172	56.8	43.2
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	40.7166	33.8762	clupea_harengus	ENSCHAP00000008443	68.8705	57.3003
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	57.4919	44.6254	oryzias_melastigma	ENSOMEP00000011089	58.5406	45.4395
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	59.9349	47.7199	kryptolebias_marmoratus	ENSKMAP00000002422	61.9529	49.3266
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	44.7883	35.342	seriola_dumerili	ENSSDUP00000024103	61.6592	48.6547
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	41.2052	34.0391	oryzias_latipes	ENSORLP00000001445	62.4691	51.6049
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.0065	53.0945	oncorhynchus_mykiss	ENSOMYP00000027018	62.88	52.16
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	48.5342	39.9023	oncorhynchus_mykiss	ENSOMYP00000100858	61.8257	50.8299
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	62.5407	49.1857	xiphophorus_maculatus	ENSXMAP00000002657	61.244	48.1659
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	58.1433	47.7199	pygocentrus_nattereri	ENSPNAP00000003992	60.8177	49.9148
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	47.557	36.9707	neolamprologus_brichardi	ENSNBRP00000019879	61.3445	47.6891
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	32.2476	23.7785	nothobranchius_furzeri	ENSNFUP00015030665	50.5102	37.2449
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	54.0717	44.2997	salmo_salar	ENSSSAP00000092184	60.9174	49.9083
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.7655	33.3876	salmo_salar	ENSSSAP00000086927	53.8314	39.272
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.0065	51.3029	amphiprion_percula	ENSAPEP00000015627	63.0819	50.5618
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.7655	36.1564	maylandia_zebra	ENSMZEP00005029160	64.0091	50.5695
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	42.8339	35.6678	anabas_testudineus	ENSATEP00000007669	64.7783	53.9409
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.8208	52.1173	dicentrarchus_labrax	ENSDLAP00005044504	63.4769	51.0367
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	41.0423	33.7134	poecilia_latipinna	ENSPLAP00000019681	60.1432	49.4033
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	43.6482	34.3648	hucho_hucho	ENSHHUP00000076916	59.6882	46.9933
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	41.5309	33.5505	amphilophus_citrinellus	ENSACIP00000002681	60.2837	48.6998
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.7655	36.1564	pundamilia_nyererei	ENSPNYP00000010244	63.2883	50
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	47.3941	37.4593	ictalurus_punctatus	ENSIPUP00000026781	60.124	47.5207
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	48.3713	38.7622	stegastes_partitus	ENSSPAP00000021476	63.0573	50.5308
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	43.4853	32.2476	cynoglossus_semilaevis	ENSCSEP00000032689	52.2505	38.7476
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	38.5993	28.5016	cynoglossus_semilaevis	ENSCSEP00000011915	60	44.3038
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	37.2964	28.8274	sinocyclocheilus_grahami	ENSSGRP00000054852	53.2558	41.1628
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	61.7264	49.5114	betta_splendens	ENSBSLP00000017495	62.1311	49.8361
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	42.9967	33.3876	scophthalmus_maximus	ENSSMAP00000019987	59.8639	46.4853
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	44.9511	35.8306	seriola_lalandi_dorsalis	ENSSLDP00000019300	61.1973	48.7805
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	65.1466	51.1401	labrus_bergylta	ENSLBEP00000010971	64	50.24
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.1694	51.7915	amphiprion_ocellaris	ENSAOCP00000029549	63.4461	51.2077
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	35.5049	27.0358	sander_lucioperca	ENSSLUP00000053842	59.726	45.4795
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	39.5765	30.1303	oryzias_javanicus	ENSOJAP00000022785	54.8533	41.7607
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	66.7752	56.1889	scleropages_formosus	ENSSFOP00015031039	64.4654	54.2453
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	58.9577	45.9283	cyprinus_carpio_carpio	ENSCCRP00000018773	60.4341	47.0785
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	59.9349	47.3941	cyprinus_carpio_carpio	ENSCCRP00000039751	63.7782	50.4333
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	45.7655	37.4593	cottoperca_gobio	ENSCGOP00000026807	63.5747	52.0362
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	43.1596	34.8534	myripristis_murdjan	ENSMMDP00005037616	62.3529	50.3529
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.0065	54.886	paramormyrops_kingsleyae	ENSPKIP00000027230	67.41	57.8045
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	33.8762	25.4072	mastacembelus_armatus	ENSMAMP00000006299	62.0896	46.5672
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	47.0684	39.2508	oncorhynchus_tshawytscha	ENSOTSP00005072501	58.6207	48.8844
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.0065	53.4202	oncorhynchus_tshawytscha	ENSOTSP00005080306	63.0819	52.6485
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	42.3453	34.202	larimichthys_crocea	ENSLCRP00005049756	64.3564	51.9802
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	64.3322	51.4658	acanthochromis_polyacanthus	ENSAPOP00000026859	63.6071	50.8857
ENSLOCG00000003219	lepisosteus_oculatus	ENSLOCP00000003803	36.8078	29.316	poecilia_formosa	ENSPFOP00000014650	59.9469	47.7454

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression