RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSLOCG00000002743	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1646 bases	Strand	Plus strand
Position	LG20 : 3416259 - 3417904	RNA binding domain	RVT_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSLOCP00000003228	RVT_1	PF00078	1.2e-41	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSLOCT00000003235	1533	510aa	ENSLOCP00000003228

Gene Model

Click here to download ENSLOCG00000002743's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSLOCG00000002743's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000021431	57.554	52.1583	lepisosteus_oculatus	ENSLOCP00000003228	31.3725	28.4314
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000014665	40.2185	36.4449	lepisosteus_oculatus	ENSLOCP00000003228	79.4118	71.9608
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000021089	41.9238	39.02	lepisosteus_oculatus	ENSLOCP00000003228	90.5882	84.3137
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003241	49.2929	44.0404	lepisosteus_oculatus	ENSLOCP00000003228	47.8431	42.7451
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000022241	10	9.5	lepisosteus_oculatus	ENSLOCP00000003228	3.92157	3.72549
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000000780	41.8455	31.7597	lepisosteus_oculatus	ENSLOCP00000003228	38.2353	29.0196

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	43.9216	29.2157	latimeria_chalumnae	ENSLACP00000010490	40.6534	27.0417
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	28.8235	18.4314	latimeria_chalumnae	ENSLACP00000001009	33.871	21.659
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	32.3529	22.1569	latimeria_chalumnae	ENSLACP00000010532	36.1842	24.7807
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	56.4706	39.2157	latimeria_chalumnae	ENSLACP00000007166	37.3541	25.9403
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	30.3922	20.1961	latimeria_chalumnae	ENSLACP00000013900	32.7696	21.7759
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	71.7647	55.098	chrysemys_picta_bellii	ENSCPBP00000004784	27.6018	21.1916
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	41.5686	31.3725	pelodiscus_sinensis	ENSPSIP00000001940	56.8365	42.8954
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	57.6471	42.3529	ficedula_albicollis	ENSFALP00000022294	27.1468	19.9446
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	40.9804	27.0588	erpetoichthys_calabaricus	ENSECRP00000028013	26.5228	17.5127
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	58.4314	37.8431	erpetoichthys_calabaricus	ENSECRP00000032756	33.9022	21.9568
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	60.1961	38.8235	erpetoichthys_calabaricus	ENSECRP00000032724	35.6977	23.0233
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	47.451	32.1569	erpetoichthys_calabaricus	ENSECRP00000032735	32.9252	22.3129
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	76.2745	58.6275	denticeps_clupeoides	ENSDCDP00000028137	32.1754	24.7312
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	71.9608	55.4902	denticeps_clupeoides	ENSDCDP00000034851	32.1085	24.7594
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	39.0196	27.2549	denticeps_clupeoides	ENSDCDP00000003360	27.5242	19.2254
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	66.2745	52.3529	denticeps_clupeoides	ENSDCDP00000041120	36.5801	28.8961
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	75.6863	58.8235	denticeps_clupeoides	ENSDCDP00000032463	32.8511	25.5319
ENSLOCG00000002743	lepisosteus_oculatus	ENSLOCP00000003228	76.2745	58.4314	denticeps_clupeoides	ENSDCDP00000015719	31.12	23.84

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression