Description

Ensembl ID ENSLLEG00000020957 Gene ID Accession -
Symbol Alias - Full Name NA
Status Confidence Length 11923 bases Strand Plus strand
Position 5 : 46295880 - 46307802 RNA binding domain PABP , RRM_5 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSLLEP00000033670 PABP PF00658 5.5e-31 1
ENSLLEP00000033670 RRM_5 PF13893 5.5e-07 2
ENSLLEP00000033670 RRM_1 PF00076 3.3e-86 3
ENSLLEP00000033670 RRM_1 PF00076 3.3e-86 4
ENSLLEP00000033670 RRM_1 PF00076 3.3e-86 5
ENSLLEP00000033670 RRM_1 PF00076 3.3e-86 6
ENSLLEP00000033161 PABP PF00658 5.9e-31 1
ENSLLEP00000033161 RRM_5 PF13893 8.5e-07 2
ENSLLEP00000033161 RRM_5 PF13893 8.5e-07 3
ENSLLEP00000033161 RRM_1 PF00076 8.6e-67 4
ENSLLEP00000033161 RRM_1 PF00076 8.6e-67 5
ENSLLEP00000033161 RRM_1 PF00076 8.6e-67 6
ENSLLEP00000033443 PABP PF00658 7.1e-31 1
ENSLLEP00000033443 RRM_5 PF13893 5.8e-08 2
ENSLLEP00000033443 RRM_5 PF13893 5.8e-08 3
ENSLLEP00000033443 RRM_1 PF00076 8.2e-89 4
ENSLLEP00000033443 RRM_1 PF00076 8.2e-89 5
ENSLLEP00000033443 RRM_1 PF00076 8.2e-89 6
ENSLLEP00000033443 RRM_1 PF00076 8.2e-89 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSLLET00000034429 2299 593aa ENSLLEP00000033161
- ENSLLET00000034717 2706 649aa ENSLLEP00000033443
- ENSLLET00000034944 2562 589aa ENSLLEP00000033670

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004200970.904657.9462leptobrachium_leishanenseENSLLEP0000003344344.684136.5177
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004076697.916797.2222leptobrachium_leishanenseENSLLEP0000003344343.451543.1433
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004080042.790726.5116leptobrachium_leishanenseENSLLEP0000003344314.17578.78274
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000001043743.236722.2222leptobrachium_leishanenseENSLLEP0000003344327.580914.1757
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000000156129.801317.8808leptobrachium_leishanenseENSLLEP0000003344327.73516.641
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004169633.226321.3483leptobrachium_leishanenseENSLLEP0000003344331.895220.4931
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004497045.584725.0597leptobrachium_leishanenseENSLLEP0000003344329.429916.1787
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004619229.792714.5078leptobrachium_leishanenseENSLLEP0000003344317.71968.62866
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003666238.366320.297leptobrachium_leishanenseENSLLEP0000003344323.882912.6348
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000002861333.408116.1435leptobrachium_leishanenseENSLLEP0000003344322.958411.094
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000000472034.523816.6667leptobrachium_leishanenseENSLLEP0000003344322.342110.7858
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003606042.583724.4019leptobrachium_leishanenseENSLLEP0000003344327.426815.7165
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004609835.087718.4211leptobrachium_leishanenseENSLLEP0000003344324.653312.943
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003119326.548715.3392leptobrachium_leishanenseENSLLEP0000003344313.86758.01233
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000002258722.939913.363leptobrachium_leishanenseENSLLEP0000003344315.87069.24499
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000001094386.581578.754leptobrachium_leishanenseENSLLEP0000003344383.513175.963
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003127328.900714.7163leptobrachium_leishanenseENSLLEP0000003344325.115612.7889
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004575233.474615.678leptobrachium_leishanenseENSLLEP0000003344324.345111.4022
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004261472.75259.1281leptobrachium_leishanenseENSLLEP0000003344341.140233.4361
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003783957.684647.9042leptobrachium_leishanenseENSLLEP0000003344344.5336.98
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000002799775.229464.2202leptobrachium_leishanenseENSLLEP0000003344337.904532.3575
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000002401643.612326.4317leptobrachium_leishanenseENSLLEP0000003344315.25429.24499
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000004556430.630617.7928leptobrachium_leishanenseENSLLEP0000003344320.955312.1726
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003845281.39970.4293leptobrachium_leishanenseENSLLEP0000003344378.890668.2589
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000000081239.237121.5259leptobrachium_leishanenseENSLLEP0000003344322.18812.1726
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000001041638.596521.0526leptobrachium_leishanenseENSLLEP0000003344310.16955.547
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000000085939.798521.6625leptobrachium_leishanenseENSLLEP0000003344324.345113.2512

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344391.063287.3652callorhinchus_miliiENSCMIP0000003325893.512789.7152
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344393.836790.2928lepisosteus_oculatusENSLOCP0000001183395.156291.5625
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.0663latimeria_chalumnaeENSLACP0000000494492.215690.4192
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344392.141887.9815clupea_harengusENSCHAP0000002506493.437589.2188
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344391.833686.7488astyanax_mexicanusENSAMXP0000005092594.006388.8013
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344377.349870.7242electrophorus_electricusENSEEEP0000003018290.94283.1522
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344369.029363.02esox_luciusENSELUP0000004617487.579.8828
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344390.909186.7488lates_calcariferENSLCAP0001003042794.70390.3692
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.607192.9122chrysemys_picta_belliiENSCPBP0000000732396.998495.2607
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.3744xenopus_tropicalisENSXETP0000001453797.160995.5836
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.2203sphenodon_punctatusENSSPUP0000002384296.855395.1258
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.45392.604laticauda_laticaudataENSLLTP0000000933096.535494.6457
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.144892.2958notechis_scutatusENSNSUP0000001692196.220594.3307
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.144892.2958pseudonaja_textilisENSPTXP0000000130996.220594.3307
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.2203anas_platyrhynchos_platyrhynchosENSAPLP0000000088596.860394.9765
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.2203gallus_gallusENSGALP0001001554991.407489.6296
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344385.20883.359meleagris_gallopavoENSMGAP0000001287496.341594.2509
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344385.20883.359serinus_canariaENSSCAP0000000552596.173994.087
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.0663ornithorhynchus_anatinusENSOANP0000001163396.855394.9686
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.761292.9122sarcophilus_harrisiiENSSHAP0000003732897.003295.1104
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344332.203431.433ailuropoda_melanoleucaENSAMEP0000003627398.584996.2264
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.0663dipodomys_ordiiENSDORP0000001310096.855394.9686
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344385.516283.5131mus_caroliMGP_CAROLIEiJ_P003806796.521794.2609
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.0663mus_musculusENSMUSP0000000180997.012694.9686
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.761292.604mus_pahariMGP_PahariEiJ_P004145196.698194.4969
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.0663mus_spretusMGP_SPRETEiJ_P003984897.012694.9686
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.0663mus_spicilegusENSMSIP0000001824597.012694.9686
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915392.9122rattus_norvegicusENSRNOP0000001277596.855394.8113
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.607192.7581monodelphis_domesticaENSMODP0000000771796.998495.1027
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344392.60489.3683erpetoichthys_calabaricusENSECRP0000002770594.645791.3386
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.3744pelodiscus_sinensisENSPSIP0000000394297.012695.283
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.2203anolis_carolinensisENSACAP0000001628696.855395.1258
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.607192.7581vombatus_ursinusENSVURP0001000904396.998495.1027
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344393.682691.8336naja_najaENSNNAP0000001485896.202594.3038
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.607192.7581phascolarctos_cinereusENSPCIP0000000231996.998495.1027
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344386.286683.6672geospiza_fortisENSGFOP0000001937794.117691.2605
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344387.211183.8213ficedula_albicollisENSFALP0000000610094.490890.818
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.298992.2958podarcis_muralisENSPMRP0000003236193.721391.7305
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344332.819728.9676oncorhynchus_tshawytschaENSOTSP0000505172482.558172.8682
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344365.023159.7843hucho_huchoENSHHUP0000005106892.341484.9015
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344394.915393.2203salvator_merianaeENSSMRP0000002743696.855395.1258
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344387.211179.5069scleropages_formosusENSSFOP0001501022389.274481.388
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344392.295888.1356scleropages_formosusENSSFOP0001500425594.330790.0787
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.5285chelonoidis_abingdoniiENSCABP0000001286397.012695.4403
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344387.365285.208coturnix_japonicaENSCJPP0000500079196.264993.8879
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344388.289785.8243anser_brachyrhynchusENSABRP0000000407491.24288.6943
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.2203aquila_chrysaetos_chrysaetosENSACCP0002000183796.860394.9765
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.5285gopherus_evgoodeiENSGEVP0000501280397.012695.4403
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.377593.3744strigops_habroptilaENSSHBP0000500179097.174395.1334
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344333.28230.2003paramormyrops_kingsleyaeENSPKIP0000003950189.626681.3278
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344395.069393.3744terrapene_carolina_triunguisENSTMTP0000000251897.012695.283
ENSLLEG00000020957leptobrachium_leishanenseENSLLEP0000003344379.044777.3498struthio_camelus_australisENSSCUP0000001286196.247794.1839

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression