RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSLCAG00010004004	Gene ID	324724	Accession	-
Symbol	dicer1	Alias	-	Full Name	dicer 1, ribonuclease type III
Status	Confidence	Length	25927 bases	Strand	Plus strand
Position	CYIF01000420.1 : 196912 - 222838	RNA binding domain	ResIII , DEAD , Ribonucleas_3_3 , PAZ , Dicer_dimer , Ribonuclease_3
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSLCAP00010008902	ResIII	PF04851	3.5e-10	1
ENSLCAP00010008902	DEAD	PF00270	3.8e-09	2
ENSLCAP00010008902	Ribonucleas_3_3	PF14622	1.1e-23	3
ENSLCAP00010008902	PAZ	PF02170	1.2e-35	4
ENSLCAP00010008902	Dicer_dimer	PF03368	1.7e-25	5
ENSLCAP00010008902	Ribonuclease_3	PF00636	8.3e-69	6
ENSLCAP00010008902	Ribonuclease_3	PF00636	8.3e-69	7
ENSLCAP00010008925	ResIII	PF04851	3.5e-10	1
ENSLCAP00010008925	DEAD	PF00270	3.7e-09	2
ENSLCAP00010008925	Ribonucleas_3_3	PF14622	1e-23	3
ENSLCAP00010008925	PAZ	PF02170	1.2e-35	4
ENSLCAP00010008925	Dicer_dimer	PF03368	1.9e-24	5
ENSLCAP00010008925	Ribonuclease_3	PF00636	9.3e-69	6
ENSLCAP00010008925	Ribonuclease_3	PF00636	9.3e-69	7
ENSLCAP00010008933	ResIII	PF04851	3.6e-10	1
ENSLCAP00010008933	DEAD	PF00270	3.7e-09	2
ENSLCAP00010008933	Ribonucleas_3_3	PF14622	1.1e-23	3
ENSLCAP00010008933	PAZ	PF02170	1.1e-35	4
ENSLCAP00010008933	Dicer_dimer	PF03368	1.9e-24	5
ENSLCAP00010008933	Ribonuclease_3	PF00636	8e-69	6
ENSLCAP00010008933	Ribonuclease_3	PF00636	8e-69	7
ENSLCAP00010008940	ResIII	PF04851	3.5e-10	1
ENSLCAP00010008940	DEAD	PF00270	3.6e-09	2
ENSLCAP00010008940	Ribonucleas_3_3	PF14622	8.5e-24	3
ENSLCAP00010008940	PAZ	PF02170	1.2e-35	4
ENSLCAP00010008940	Dicer_dimer	PF03368	1.8e-25	5
ENSLCAP00010008940	Ribonuclease_3	PF00636	3.3e-69	6
ENSLCAP00010008940	Ribonuclease_3	PF00636	3.3e-69	7
ENSLCAP00010008984	ResIII	PF04851	3.5e-10	1
ENSLCAP00010008984	DEAD	PF00270	3.7e-09	2
ENSLCAP00010008984	Ribonucleas_3_3	PF14622	1.1e-23	3
ENSLCAP00010008984	PAZ	PF02170	1.2e-35	4
ENSLCAP00010008984	Dicer_dimer	PF03368	1.8e-24	5
ENSLCAP00010008984	Ribonuclease_3	PF00636	6.3e-69	6
ENSLCAP00010008984	Ribonuclease_3	PF00636	6.3e-69	7
ENSLCAP00010009001	ResIII	PF04851	3.6e-10	1
ENSLCAP00010009001	DEAD	PF00270	3.8e-09	2
ENSLCAP00010009001	Ribonucleas_3_3	PF14622	1.1e-23	3
ENSLCAP00010009001	PAZ	PF02170	1.2e-35	4
ENSLCAP00010009001	Dicer_dimer	PF03368	1.8e-24	5
ENSLCAP00010009001	Ribonuclease_3	PF00636	1.4e-68	6
ENSLCAP00010009001	Ribonuclease_3	PF00636	1.4e-68	7
ENSLCAP00010009010	ResIII	PF04851	3.6e-10	1
ENSLCAP00010009010	DEAD	PF00270	3.7e-09	2
ENSLCAP00010009010	Ribonucleas_3_3	PF14622	1e-23	3
ENSLCAP00010009010	PAZ	PF02170	1.2e-35	4
ENSLCAP00010009010	Dicer_dimer	PF03368	1.8e-24	5
ENSLCAP00010009010	Ribonuclease_3	PF00636	7e-69	6
ENSLCAP00010009010	Ribonuclease_3	PF00636	7e-69	7

Showing 1 to 49 of 49 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
dicer1-201	ENSLCAT00010009108	5847	1883aa	ENSLCAP00010008902
dicer1-202	ENSLCAT00010009131	5814	1872aa	ENSLCAP00010008925
dicer1-203	ENSLCAT00010009139	5793	1865aa	ENSLCAP00010008933
dicer1-204	ENSLCAT00010009146	5655	1819aa	ENSLCAP00010008940
dicer1-205	ENSLCAT00010009190	5595	1864aa	ENSLCAP00010008984
dicer1-206	ENSLCAT00010009208	5691	1896aa	ENSLCAP00010009001
dicer1-207	ENSLCAT00010009217	5628	1875aa	ENSLCAP00010009010

Showing 1 to 7 of 7 entries

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Gene Model

Click here to download ENSLCAG00010004004's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSLCAG00010004004's PPI file

Orthologs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	83.597	79.2721	fundulus_heteroclitus	ENSFHEP00000015141	88.3993	83.826
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	89.9789	86.3397	xiphophorus_maculatus	ENSXMAP00000015793	91.7204	88.0107
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	89.7679	86.1814	poecilia_reticulata	ENSPREP00000017960	91.5054	87.8495
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	89.8734	86.4979	oryzias_latipes	ENSORLP00000013824	90.2542	86.8644
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	90.5591	88.1329	cyclopterus_lumpus	ENSCLMP00005020523	89.8482	87.4411
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	91.1392	88.3966	oreochromis_niloticus	ENSONIP00000013102	91.3319	88.5835
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	91.4557	88.7658	haplochromis_burtoni	ENSHBUP00000016896	90.9759	88.3001
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	91.6139	88.7131	astatotilapia_calliptera	ENSACLP00000011613	91.1333	88.2476
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	94.3038	92.5633	sparus_aurata	ENSSAUP00010049400	93.4658	91.7407
ENSLCAG00010004004	lates_calcarifer	ENSLCAP00010009001	92.1941	89.7679	cottoperca_gobio	ENSCGOP00000019582	92.0969	89.6733

Showing 1 to 10 of 205 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression