RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSLBEG00000026324	Gene ID		Accession	-
Symbol	si	Alias	-	Full Name	si:ch211-153b23.3
Status	Confidence	Length	3670 bases	Strand	Minus strand
Position	FKLU01000293.1 : 324138 - 327807	RNA binding domain	Sua5_yciO_yrdC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSLBEP00000035039	Sua5_yciO_yrdC	PF01300	9.2e-34	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSLBET00000036535	2622	873aa	ENSLBEP00000035039

Gene Model

Click here to download ENSLBEG00000026324's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSLBEG00000026324's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035004	41.9244	23.8259	labrus_bergylta	ENSLBEP00000035039	41.9244	23.8259
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000036790	40.824	24.7191	labrus_bergylta	ENSLBEP00000035039	12.4857	7.56014

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	90.0344	82.2451	fundulus_heteroclitus	ENSFHEP00000026910	89.3182	81.5909
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	86.827	79.496	oryzias_latipes	ENSORLP00000007750	87.1264	79.7701
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	88.7743	80.8706	xiphophorus_maculatus	ENSXMAP00000040007	88.7743	80.8706
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	91.8671	85.7961	cyclopterus_lumpus	ENSCLMP00005040206	89.8096	83.8746
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	88.8889	81.2142	haplochromis_burtoni	ENSHBUP00000021825	88.4835	80.8438
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	89.4616	81.5578	oreochromis_niloticus	ENSONIP00000064622	88.0496	80.2706
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	88.7743	81.0997	astatotilapia_calliptera	ENSACLP00000008661	88.3694	80.7298
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	92.3253	86.9416	sparus_aurata	ENSSAUP00010035521	90.2576	84.9944
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	21.8786	19.8167	dicentrarchus_labrax	ENSDLAP00005019202	83.4061	75.5459
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	89.6907	81.0997	cyprinodon_variegatus	ENSCVAP00000017930	89.2816	80.7298
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	87.5143	80.0687	oryzias_melastigma	ENSOMEP00000026043	87.7153	80.2526
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	87.9725	81.0997	kryptolebias_marmoratus	ENSKMAP00000009077	87.4715	80.6378
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	88.8889	81.2142	neolamprologus_brichardi	ENSNBRP00000017313	88.4835	80.8438
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	89.3471	81.2142	poecilia_latipinna	ENSPLAP00000012903	88.9396	80.8438
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	83.1615	77.0905	amphilophus_citrinellus	ENSACIP00000008924	89.2989	82.7798
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	89.4616	82.4742	anabas_testudineus	ENSATEP00000007065	85.0763	78.4314
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	15.0057	14.433	gasterosteus_aculeatus	ENSGACP00000024126	95.6204	91.9708
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	79.8396	73.0813	tetraodon_nigroviridis	ENSTNIP00000011816	86.4764	79.1563
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	21.5349	19.9313	oryzias_javanicus	ENSOJAP00000003049	77.3663	71.6049
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	87.858	81.2142	betta_splendens	ENSBSLP00000035562	87.0602	80.4767
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	90.6071	83.2761	larimichthys_crocea	ENSLCRP00005029280	89.4796	82.2398
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	91.8671	84.7652	amphiprion_percula	ENSAPEP00000020601	91.24	84.1866
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	21.764	19.7022	seriola_dumerili	ENSSDUP00000009252	67.1378	60.7774
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	23.7113	21.764	seriola_dumerili	ENSSDUP00000009037	87.7119	80.5085
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	91.8671	84.6506	amphiprion_ocellaris	ENSAOCP00000024265	91.24	84.0728
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	88.7743	81.3288	maylandia_zebra	ENSMZEP00005015259	88.3694	80.9578
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	20.2749	18.7858	seriola_lalandi_dorsalis	ENSSLDP00000010925	89.8477	83.2487
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	90.7216	83.7343	seriola_lalandi_dorsalis	ENSSLDP00000010852	90.1024	83.1627
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	88.7743	81.0997	pundamilia_nyererei	ENSPNYP00000000331	88.3694	80.7298
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	24.6277	21.6495	oryzias_sinensis	ENSOSIP00000000537	87.3984	76.8293
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	89.6907	81.5578	poecilia_formosa	ENSPFOP00000012299	88.1757	80.1802
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	87.2852	78.236	cynoglossus_semilaevis	ENSCSEP00000023290	86.6894	77.7019
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	75.3723	61.1684	callorhinchus_milii	ENSCMIP00000009483	74.8578	60.7509
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	69.4158	55.2119	latimeria_chalumnae	ENSLACP00000006543	72.5749	57.7246
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	53.8373	43.1844	lepisosteus_oculatus	ENSLOCP00000018537	68.5131	54.9563
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.5578	68.9576	clupea_harengus	ENSCHAP00000052209	79.8206	67.4888
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.7869	71.5922	danio_rerio	ENSDARP00000129937	81.1364	71.0227
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.6724	71.134	carassius_auratus	ENSCARP00000043742	81.1149	70.6485
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.4433	71.3631	carassius_auratus	ENSCARP00000019107	81.0718	71.0376
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	82.7033	71.9359	astyanax_mexicanus	ENSAMXP00000033723	82.8932	72.101
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.5578	71.4777	ictalurus_punctatus	ENSIPUP00000022462	82.5029	72.3059
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	72.2795	63.6884	esox_lucius	ENSELUP00000073657	82.0546	72.3017
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	85.567	75.0286	oncorhynchus_kisutch	ENSOKIP00005021221	82.0879	71.978
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	83.047	71.7068	oncorhynchus_kisutch	ENSOKIP00005021354	73.3064	63.2963
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	83.3906	72.5086	oncorhynchus_mykiss	ENSOMYP00000072796	81.523	70.8847
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	85.7961	74.685	oncorhynchus_mykiss	ENSOMYP00000072789	82.3077	71.6484
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	84.307	74.3414	salmo_salar	ENSSSAP00000034385	81.1466	71.5546
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	73.8832	64.1466	salmo_salar	ENSSSAP00000147483	81.0302	70.3518
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	84.0779	73.9977	salmo_trutta	ENSSTUP00000101152	80.9261	71.2238
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	51.3173	46.8499	salmo_trutta	ENSSTUP00000088740	86.6538	79.1103
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	86.5979	77.4341	gadus_morhua	ENSGMOP00000046650	83.7209	74.8616
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	73.3104	58.8774	xenopus_tropicalis	ENSXETP00000088176	73.903	59.3533
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	71.9359	57.3883	gallus_gallus	ENSGALP00010016846	71.8535	57.3227
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	70.9049	57.2738	parus_major	ENSPMJP00000016237	70.9862	57.3395
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	73.3104	58.8774	ornithorhynchus_anatinus	ENSOANP00000048633	73.1429	58.7429
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	58.0756	45.9336	erpetoichthys_calabaricus	ENSECRP00000018252	67.0635	53.0423
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	83.6197	73.7686	pygocentrus_nattereri	ENSPNAP00000031933	83.4286	73.6
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	58.3047	47.5372	taeniopygia_guttata	ENSTGUP00000028920	70.9902	57.8801
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	32.646	27.3769	ficedula_albicollis	ENSFALP00000011826	76.8194	64.4205
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	71.9359	57.732	coturnix_japonica	ENSCJPP00005021125	70.1676	56.3129
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	72.5086	57.6174	leptobrachium_leishanense	ENSLLEP00000018106	72.3429	57.4857
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	72.394	57.6174	leptobrachium_leishanense	ENSLLEP00000041366	72.2286	57.4857
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	72.394	57.6174	leptobrachium_leishanense	ENSLLEP00000042757	72.2286	57.4857
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	12.6002	6.18557	saccharomyces_cerevisiae	YGL169W	25.8216	12.6761
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.7869	71.5922	cyprinus_carpio_carpio	ENSCCRP00000055594	81.2287	71.1035
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	81.4433	71.3631	cyprinus_carpio_carpio	ENSCCRP00000054421	81.0718	71.0376
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	83.9633	73.3104	scleropages_formosus	ENSSFOP00015016945	83.7714	73.1429
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	72.394	58.5338	anser_brachyrhynchus	ENSABRP00000022603	72.3112	58.4668
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	71.7068	57.1592	struthio_camelus_australis	ENSSCUP00000000605	71.6247	57.0938
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	79.8396	69.3013	paramormyrops_kingsleyae	ENSPKIP00000005996	82.9762	72.0238
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	78.5796	68.614	hucho_hucho	ENSHHUP00000005754	81.376	71.0558
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	15.0057	14.2039	hucho_hucho	ENSHHUP00000018122	95.6204	90.5109
ENSLBEG00000026324	labrus_bergylta	ENSLBEP00000035039	82.4742	70.5613	denticeps_clupeoides	ENSDCDP00000013317	80.5369	68.9038

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression