| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSLBEG00000024500 | Gene ID |
109984064 |
Accession |
- |
| Symbol |
prpf38b |
Alias |
- |
Full Name |
pre-mRNA processing factor 38B |
| Status |
Confidence |
Length |
8012 bases |
Strand |
Minus strand |
| Position |
FKLU01000064.1 : 714180 - 722191 |
RNA binding domain |
PRP38 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSLBEP00000032543 |
PRP38 |
PF03371 |
6.5e-50 |
1 |
| ENSLBEP00000032551 |
PRP38 |
PF03371 |
1.2e-41 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| prpf38b-201 |
ENSLBET00000033997 |
1419 |
472aa |
ENSLBEP00000032543 |
| prpf38b-202 |
ENSLBET00000034006 |
555 |
184aa |
ENSLBEP00000032551 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSLBEG00000024500 | | | | | | | | |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 91.5254 | 83.2627 | fundulus_heteroclitus | ENSFHEP00000002077 | 93.5065 | 85.0649 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 92.5847 | 86.4407 | haplochromis_burtoni | ENSHBUP00000020245 | 94.7939 | 88.5033 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 92.3729 | 86.2288 | astatotilapia_calliptera | ENSACLP00000002505 | 94.577 | 88.2863 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 94.0678 | 88.5593 | dicentrarchus_labrax | ENSDLAP00005059974 | 95.0749 | 89.5075 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 55.0847 | 48.9407 | cyprinodon_variegatus | ENSCVAP00000004275 | 93.8628 | 83.3935 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 57.2034 | 51.2712 | neolamprologus_brichardi | ENSNBRP00000025134 | 94.4056 | 84.6154 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 58.0508 | 51.2712 | amphilophus_citrinellus | ENSACIP00000021210 | 94.8097 | 83.737 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 92.161 | 87.2881 | gasterosteus_aculeatus | ENSGACP00000019986 | 92.5532 | 87.6596 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 56.3559 | 47.2458 | oryzias_javanicus | ENSOJAP00000049889 | 93.9929 | 78.7986 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 94.7034 | 88.3475 | mastacembelus_armatus | ENSMAMP00000015678 | 95.3092 | 88.9126 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 94.9153 | 87.9237 | acanthochromis_polyacanthus | ENSAPOP00000023477 | 95.5224 | 88.4861 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 94.9153 | 87.9237 | acanthochromis_polyacanthus | ENSAPOP00000010375 | 95.5224 | 88.4861 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 56.1441 | 50.2119 | scophthalmus_maximus | ENSSMAP00000002859 | 93.3099 | 83.4507 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 94.4915 | 89.4068 | larimichthys_crocea | ENSLCRP00005013822 | 96.5368 | 91.342 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 95.339 | 88.1356 | amphiprion_percula | ENSAPEP00000015421 | 87.7193 | 81.0916 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 58.2627 | 52.1186 | seriola_dumerili | ENSSDUP00000022806 | 94.1781 | 84.2466 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 95.339 | 87.9237 | amphiprion_ocellaris | ENSAOCP00000008639 | 87.7193 | 80.8967 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 92.3729 | 86.2288 | maylandia_zebra | ENSMZEP00005034173 | 94.577 | 88.2863 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 92.5847 | 86.4407 | pundamilia_nyererei | ENSPNYP00000010037 | 94.7939 | 88.5033 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 95.1271 | 88.1356 | stegastes_partitus | ENSSPAP00000030894 | 95.9402 | 88.8889 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 54.661 | 49.3644 | sander_lucioperca | ENSSLUP00000005231 | 90.5263 | 81.7544 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 85.5932 | 72.0339 | lepisosteus_oculatus | ENSLOCP00000009556 | 76.3705 | 64.2722 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 83.2627 | 71.822 | clupea_harengus | ENSCHAP00000026111 | 79.2339 | 68.3468 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 85.3814 | 73.9407 | danio_rerio | ENSDARP00000069565 | 80.4391 | 69.6607 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 83.8983 | 70.9746 | carassius_auratus | ENSCARP00000001134 | 80.9816 | 68.5072 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 78.8136 | 65.8898 | carassius_auratus | ENSCARP00000010796 | 80.5195 | 67.316 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 79.4492 | 67.7966 | ictalurus_punctatus | ENSIPUP00000022037 | 80.819 | 68.9655 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 83.0508 | 74.5763 | oncorhynchus_tshawytscha | ENSOTSP00005037066 | 82.1803 | 73.7945 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 84.5339 | 71.3983 | cyprinus_carpio_carpio | ENSCCRP00000117271 | 81.0976 | 68.4959 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 82.839 | 68.2203 | anser_brachyrhynchus | ENSABRP00000013029 | 71.2204 | 58.6521 |
| ENSLBEG00000024500 | labrus_bergylta | ENSLBEP00000032543 | 83.2627 | 74.7881 | hucho_hucho | ENSHHUP00000062185 | 79.2339 | 71.1694 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
