RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSLBEG00000006968	Gene ID	110003673	Accession	-
Symbol	si	Alias	-	Full Name	uncharacterized LOC110003673
Status	Confidence	Length	3940 bases	Strand	Minus strand
Position	FKLU01001235.1 : 32603 - 36542	RNA binding domain	CYTH
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSLBEP00000009014	CYTH	PF01928	3.3e-20	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSLBET00000009503	1666	283aa	ENSLBEP00000009014

Gene Model

Click here to download ENSLBEG00000006968's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSLBEG00000006968's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLBEG00000006968

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	52.6502	48.0565	fundulus_heteroclitus	ENSFHEP00000012159	89.2216	81.4371
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.9364	41.3428	poecilia_reticulata	ENSPREP00000008166	69.8925	62.9032
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	56.8905	49.47	oryzias_latipes	ENSORLP00000042105	92.5287	80.4598
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	54.417	46.2898	xiphophorus_maculatus	ENSXMAP00000010499	72.3005	61.5023
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	60.424	55.1237	cyclopterus_lumpus	ENSCLMP00005029484	81.8182	74.6412
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	57.2438	50.8834	haplochromis_burtoni	ENSHBUP00000002349	76.4151	67.9245
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	61.1307	55.8304	oreochromis_niloticus	ENSONIP00000067532	88.2653	80.6122
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	53.7102	49.8233	astatotilapia_calliptera	ENSACLP00000016261	92.6829	85.9756
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	63.9576	57.5972	sparus_aurata	ENSSAUP00010034887	76.0504	68.4874
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.6431	42.0495	lates_calcarifer	ENSLCAP00010018177	79.0419	71.2575
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	60.424	57.2438	dicentrarchus_labrax	ENSDLAP00005043736	82.6087	78.2609
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	52.6502	48.0565	cyprinodon_variegatus	ENSCVAP00000031232	89.2216	81.4371
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	56.1837	50.53	oryzias_melastigma	ENSOMEP00000020699	81.5385	73.3333
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	56.5371	50.8834	takifugu_rubripes	ENSTRUP00000050979	90.3955	81.3559
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	51.9435	44.8763	kryptolebias_marmoratus	ENSKMAP00000009862	81.6667	70.5556
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	65.371	58.3039	neolamprologus_brichardi	ENSNBRP00000018902	67.029	59.7826
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	59.0106	50.53	poecilia_latipinna	ENSPLAP00000025393	82.6733	70.7921
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	60.0707	54.7703	amphilophus_citrinellus	ENSACIP00000019130	68	62
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	57.9505	53.3569	anabas_testudineus	ENSATEP00000067652	91.6201	84.3575
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	36.7491	33.5689	tetraodon_nigroviridis	ENSTNIP00000005433	85.2459	77.8689
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	56.5371	50.53	oryzias_javanicus	ENSOJAP00000031341	82.0513	73.3333
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	59.0106	51.5901	betta_splendens	ENSBSLP00000024769	88.3598	77.2487
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	60.424	54.0636	mastacembelus_armatus	ENSMAMP00000027859	75.6637	67.6991
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	59.364	54.0636	acanthochromis_polyacanthus	ENSAPOP00000010220	70.2929	64.0167
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	55.8304	48.0565	hippocampus_comes	ENSHCOP00000003616	90.8046	78.1609
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	55.477	50.8834	scophthalmus_maximus	ENSSMAP00000015474	90.2299	82.7586
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	64.311	59.7173	larimichthys_crocea	ENSLCRP00005014489	66.1818	61.4545
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	61.4841	55.477	amphiprion_percula	ENSAPEP00000032371	60.2076	54.3253
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	61.4841	56.8905	cottoperca_gobio	ENSCGOP00000006548	74.6781	69.0987
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	55.477	49.1166	nothobranchius_furzeri	ENSNFUP00015012167	88.7006	78.5311
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	57.9505	52.6502	seriola_dumerili	ENSSDUP00000020107	91.1111	82.7778
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	59.7173	54.0636	amphiprion_ocellaris	ENSAOCP00000023853	68.4211	61.9433
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	53.7102	49.8233	maylandia_zebra	ENSMZEP00005025592	92.6829	85.9756
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	57.9505	52.2968	seriola_lalandi_dorsalis	ENSSLDP00000016708	90.1099	81.3187
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	61.8375	53.0035	oryzias_sinensis	ENSOSIP00000005779	53.3537	45.7317
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	47.3498	41.3428	poecilia_formosa	ENSPFOP00000025634	73.6264	64.2857
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	39.576	28.2686	caenorhabditis_elegans	F35D11.4.1	64.3678	45.977
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	39.2226	26.5018	drosophila_melanogaster	FBpp0311823	51.8692	35.0467
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	43.1095	37.4558	cynoglossus_semilaevis	ENSCSEP00000006383	72.1893	62.7219
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	42.0495	30.3887	ciona_intestinalis	ENSCINP00000001134	68.3908	49.4253
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	62.5442	58.3039	sander_lucioperca	ENSSLUP00000035335	71.371	66.5323
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	39.2226	31.8021	callorhinchus_milii	ENSCMIP00000002736	49.5536	40.1786
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	47.3498	39.576	latimeria_chalumnae	ENSLACP00000010670	77.4566	64.7399
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.9965	40.9894	lepisosteus_oculatus	ENSLOCP00000020705	77.3256	67.4419
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.9965	40.2827	clupea_harengus	ENSCHAP00000046815	74.7191	64.0449
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.9364	38.1625	danio_rerio	ENSDARP00000136467	74.2857	61.7143
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.583	37.8092	carassius_auratus	ENSCARP00000010529	72.8814	60.452
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.583	38.5159	carassius_auratus	ENSCARP00000063085	72.8814	61.5819
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.583	40.636	astyanax_mexicanus	ENSAMXP00000033242	73.2955	65.3409
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	47.3498	39.2226	ictalurus_punctatus	ENSIPUP00000030781	60.9091	50.4545
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.6431	39.2226	electrophorus_electricus	ENSEEEP00000050403	74.5763	62.7119
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	52.2968	43.4629	esox_lucius	ENSELUP00000010415	66.9683	55.6561
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	50.1767	40.636	oncorhynchus_kisutch	ENSOKIP00005111423	79.3296	64.2458
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	51.2367	42.4028	oncorhynchus_mykiss	ENSOMYP00000117680	84.3023	69.7674
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	51.2367	42.4028	oncorhynchus_mykiss	ENSOMYP00000118908	84.3023	69.7674
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	56.1837	43.8163	salmo_salar	ENSSSAP00000134147	67.0886	52.3207
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	50.8834	42.0495	salmo_salar	ENSSSAP00000066711	82.7586	68.3908
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	52.6502	42.7562	salmo_trutta	ENSSTUP00000104596	74.8744	60.804
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	52.6502	42.7562	salmo_trutta	ENSSTUP00000104575	74.8744	60.804
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.1696	37.8092	gadus_morhua	ENSGMOP00000021374	62.5	53.5
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.523	36.0424	xenopus_tropicalis	ENSXETP00000109299	55.2632	44.7368
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	27.9152	19.788	chrysemys_picta_bellii	ENSCPBP00000007928	62.2047	44.0945
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.523	33.2155	laticauda_laticaudata	ENSLLTP00000010461	72	53.7143
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.523	33.2155	notechis_scutatus	ENSNSUP00000014842	72.4138	54.023
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.1696	32.8622	pseudonaja_textilis	ENSPTXP00000026584	71.4286	53.1429
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.2898	39.576	erpetoichthys_calabaricus	ENSECRP00000007223	76.6082	65.4971
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	47.7032	39.576	pygocentrus_nattereri	ENSPNAP00000005020	76.7045	63.6364
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	43.1095	31.0954	ciona_savignyi	ENSCSAVP00000001609	67.4033	48.6188
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	43.4629	33.2155	aquila_chrysaetos_chrysaetos	ENSACCP00020006004	69.8864	53.4091
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.9965	33.9223	taeniopygia_guttata	ENSTGUP00000025114	15.0452	10.8597
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	35.3357	27.9152	leptobrachium_leishanense	ENSLLEP00000019550	43.6681	34.4978
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	48.0565	36.3958	salvator_merianae	ENSSMRP00000026531	76.4045	57.8652
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	39.9293	30.3887	oncorhynchus_tshawytscha	ENSOTSP00005031288	33.8323	25.7485
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.583	38.1625	sinocyclocheilus_grahami	ENSSGRP00000094333	72.8814	61.0169
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	45.9364	38.1625	sinocyclocheilus_grahami	ENSSGRP00000004845	73.4463	61.0169
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.1696	35.3357	cyprinus_carpio_carpio	ENSCCRP00000123728	66.8449	53.4759
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	44.8763	37.8092	cyprinus_carpio_carpio	ENSCCRP00000175416	74.7059	62.9412
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	46.9965	38.8693	scleropages_formosus	ENSSFOP00015033115	76.8786	63.5838
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	34.629	26.8551	gopherus_evgoodei	ENSGEVP00005001909	75.969	58.9147
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	50.8834	39.9293	paramormyrops_kingsleyae	ENSPKIP00000010699	59.5041	46.6942
ENSLBEG00000006968	labrus_bergylta	ENSLBEP00000009014	47.3498	38.8693	denticeps_clupeoides	ENSDCDP00000031697	75.2809	61.7978

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression