Description

Ensembl ID ENSLACG00000019122 Gene ID Accession -
Symbol PRPF40B Alias - Full Name pre-mRNA processing factor 40 homolog B
Status Confidence Length 30294 bases Strand Plus strand
Position JH126563.1 : 8495773 - 8526066 RNA binding domain FF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSLACP00000021759 FF PF01846 4.7e-49 1
ENSLACP00000021759 FF PF01846 4.7e-49 2
ENSLACP00000021759 FF PF01846 4.7e-49 3
ENSLACP00000021759 FF PF01846 4.7e-49 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
PRPF40B-201 ENSLACT00000021900 2685 894aa ENSLACP00000021759

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSLACG00000019122latimeria_chalumnaeENSLACP0000000753074.501163.4146latimeria_chalumnaeENSLACP0000002175975.167863.9821

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175946.532430.2013caenorhabditis_elegansZK1098.1a.157.458637.2928
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175953.243837.9195drosophila_melanogasterFBpp007733359.057142.0596
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175953.803142.17ciona_intestinalisENSCINP0000001682659.018446.2577
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175975.391563.4228petromyzon_marinusENSPMAP0000000335775.900963.8514
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175945.973239.2617eptatretus_burgeriENSEBUP0000000554975.412864.4037
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175929.194622.8188choloepus_hoffmanniENSCHOP0000000427230.597923.9156
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042pan_troglodytesENSPTRP0000005023676.004663.9495
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.4161dasypus_novemcinctusENSDNOP0000003345570.437659.5518
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175968.903858.0537pongo_abeliiENSPPYP0000000512766.450955.9871
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175917.22613.6465ursus_americanusENSUAMP0000002080355.395743.8849
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042macaca_mulattaENSMMUP0000005737574.215262.4439
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175969.910558.8367vulpes_vulpesENSVVUP0000002977370.781459.5696
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042cercocebus_atysENSCATP0000001710076.004663.9495
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.601861.6331pan_paniscusENSPPAP0000001034073.849661.8406
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.0805callithrix_jacchusENSCJAP0000003908675.715963.5739
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.608563.5347sarcophilus_harrisiiENSSHAP0000002417771.643461.0097
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.4161mustela_putorius_furoENSMPUP0000001446775.802763.9908
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.266260.7383ochotona_princepsENSOPRP0000000422175.028662.1993
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042homo_sapiensENSP0000044807374.215262.4439
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042macaca_nemestrinaENSMNEP0000001894474.215262.4439
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.7517panthera_pardusENSPPRP0000001682174.60563.3183
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.3042dipodomys_ordiiENSDORP0000000025075.862164.023
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175971.476559.5078urocitellus_parryiiENSUPAP0001001201273.36461.0792
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175965.548157.2707chrysemys_picta_belliiENSCPBP0000002778872.614663.4449
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.6398panthera_leoENSPLOP0000001792474.60563.2054
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042macaca_fascicularisENSMFAP0000002160276.004663.9495
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175979.082868.3445xenopus_tropicalisENSXETP0000007048975.61565.3476
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.1924gorilla_gorillaENSGGOP0000000155674.103162.3318
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.6398sus_scrofaENSSSCP0000000021576.355264.5905
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.7517bos_taurusENSBTAP0000005756768.821758.4984
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042papio_anubisENSPANP0000000231476.004663.9495
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175969.239459.0604notamacropus_eugeniiENSMEUP0000000083773.341262.5592
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.713662.1924aotus_nancymaaeENSANAP0000002429473.713662.1924
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.7517equus_caballusENSECAP0000001867172.667461.5807
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.3042tursiops_truncatusENSTTRP0000001119275.688163.8761
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.1924balaenoptera_musculusENSBMSP0001002535573.908262.262
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.6398camelus_dromedariusENSCDRP0000500806262.440952.9801
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175972.371460.962oryctolagus_cuniculusENSOCUP0000004406861.560451.8554
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.5213rattus_norvegicusENSRNOP0000008066674.157361.7978
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175941.498934.5638sorex_araneusENSSARP0000001083147.87139.871
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175938.031331.5436sorex_araneusENSSARP0000001177074.725361.978
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.272962.8635canis_lupus_familiarisENSCAFP0084502684966.599856.3691
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.6331mus_spicilegusENSMSIP0000000339175.949463.4062
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937461.8568otolemur_garnettiiENSOGAP0000000458875.715963.3448
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175971.476560.2908ursus_maritimusENSUMAP0000000897370.764159.6899
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.8635ovis_aries_rambouilletENSOARP0002000069775.802764.4495
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175969.798761.745crocodylus_porosusENSCPRP0000500266975.090366.426
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175910.62648.50112octodon_degusENSODEP0000001477669.852955.8824
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.161162.0805mesocricetus_auratusENSMAUP0000001206875.598663.2839
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.608563.1991vombatus_ursinusENSVURP0001000870174.69263.2699
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.9687sciurus_vulgarisENSSVLP0000501978873.908262.0381
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.7517bison_bison_bisonENSBBBP0000001539473.908262.8219
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175930.201315.9955saccharomyces_cerevisiaeYKL012W46.312224.5283
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.9687cavia_porcellusENSCPOP0000002221874.157362.2472
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175955.48147.4273notechis_scutatusENSNSUP0000002528485.664973.2297
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175971.923959.8434monodon_monocerosENSMMNP0001501876559.647549.6289
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.601861.5213chinchilla_lanigeraENSCLAP0000000229776.069463.5838
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.6398ailuropoda_melanoleucaENSAMEP0000000101874.074162.8507
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175961.74551.7897nomascus_leucogenysENSNLEP0000002365875.720263.5117
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049261.9687cricetulus_griseus_chok1gshdENSCGRP0000100499673.966561.8994
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175959.507849.8881ornithorhynchus_anatinusENSOANP0000003586066.334255.611
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175972.595160.8501tupaia_belangeriENSTBEP0000000627074.341462.3139
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.489962.528moschus_moschiferusENSMMSP0000002026875.34464.1055
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.489961.4094jaculus_jaculusENSJJAP0000001152676.306663.7631
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175954.586146.868pseudonaja_textilisENSPTXP0000000861683.70571.8696
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175972.930662.0805loxodonta_africanaENSLAFP0000001230674.856563.7199
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175970.357959.396panthera_tigris_altaicaENSPTIP0000001516477.94365.7993
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.7517bos_grunniensENSBGRP0000000327773.908262.8219
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175953.91546.6443naja_najaENSNNAP0000001370685.008873.545
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175955.033647.8747podarcis_muralisENSPMRP0000003436983.389872.5424
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175971.812161.2975bos_indicus_hybridENSBIXP0000503735469.330559.1793
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.713662.6398rhinolophus_ferrumequinumENSRFEP0001001907574.044962.9213
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.161162.4161rhinopithecus_roxellanaENSRROP0000002877374.327462.5561
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.272961.745nannospalax_galiliENSNGAP0000002058175.885763.0857
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.713662.1924phocoena_sinusENSPSNP0000001368475.573463.7615
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.384861.745peromyscus_maniculatus_bairdiiENSPEMP0000001703175.826762.9418
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.161162.4161marmota_marmota_marmotaENSMMMP0000002638875.771463.7714
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.3042delphinapterus_leucasENSDLEP0000002251576.212564.3187
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175928.523524.8322sphenodon_punctatusENSSPUP0000002127077.743967.6829
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.266261.5213heterocephalus_glaber_femaleENSHGLP0000000563973.021261.3155
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.8635capra_hircusENSCHIP0000002852376.416264.9711
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.745mus_caroliMGP_CAROLIEiJ_P003974775.601463.2302
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175972.147761.0738canis_lupus_dingoENSCAFP0002001706074.394562.9758
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175972.371460.962rhinopithecus_bietiENSRBIP0000001186072.696661.236
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175976.510166.7785gopherus_evgoodeiENSGEVP0000501347378.983868.9376
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175953.91546.9799erpetoichthys_calabaricusENSECRP0000001619368.175459.4059
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175964.541455.0336procavia_capensisENSPCAP0000001248866.093956.3574
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.4161mandrillus_leucophaeusENSMLEP0000003972976.004664.0643
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175960.850151.7897erinaceus_europaeusENSEEUP0000000667670.466359.9741
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175971.812160.6264phascolarctos_cinereusENSPCIP0000003636772.954561.5909
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175965.548155.0336felis_catusENSFCAP0000004922664.82354.4248
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.161161.9687microtus_ochrogasterENSMOCP0000000114075.858163.3867
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.713662.1924carlito_syrichtaENSTSYP0000001250573.713662.1924
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.1924chlorocebus_sabaeusENSCSAP0000000236674.215262.3318
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.042561.8568myotis_lucifugusENSMLUP0000000582473.618962.345
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.6331mus_spretusMGP_SPRETEiJ_P004158175.601463.1157
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.0805saimiri_boliviensis_boliviensisENSSBOP0000001808675.715963.5739
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175971.923961.4094bos_mutusENSBMUP0000003140875.204764.2105
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175963.422855.9284terrapene_carolina_triunguisENSTMTP0000003048772.045763.5324
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.713662.0805cebus_imitatorENSCCAP0000002472375.486863.5739
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.0805catagonus_wagneriENSCWAP0000002414573.825562.0805
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.049262.3042ictidomys_tridecemlineatusENSSTOP0000002906272.508261.0077
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825562.3042physeter_catodonENSPCTP0000501142273.908262.374
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175969.127558.5011equus_asinusENSEASP0000500153972.963461.7473
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.825561.6331mus_musculusENSMUSP0000011586975.601463.1157
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.0805prolemur_simusENSPSMP0000002565773.937462.0805
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.272962.3042microcebus_murinusENSMICP0000003190374.189962.2346
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175960.850152.4608chelonoidis_abingdoniiENSCABP0000001202664.075455.2415
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175951.56644.1834echinops_telfairiENSETEP0000001580053.918146.1988
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175955.145447.5392anolis_carolinensisENSACAP0000002678778.75467.8914
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175970.693559.8434pteropus_vampyrusENSPVAP0000001497372.979261.7783
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175915.212510.8501ciona_savignyiENSCSAVP0000001383671.204250.7853
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.272962.3042propithecus_coquereliENSPCOP0000002999174.272962.3042
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.713661.745mus_pahariMGP_PahariEiJ_P004309875.486863.2302
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175974.608562.9754salvator_merianaeENSSMRP0000001182375.795563.9773
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175969.351259.8434leptobrachium_leishanenseENSLLEP0000000686866.882457.7131
ENSLACG00000019122latimeria_chalumnaeENSLACP0000002175973.937462.4161neovison_visonENSNVIP0000000797369.947159.0476

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression