Description

Ensembl ID ENSLACG00000001792 Gene ID Accession -
Symbol msh2 Alias - Full Name mutS homolog 2 (E. coli)
Status Confidence Length 18914 bases Strand Plus strand
Position JH130144.1 : 30303 - 49216 RNA binding domain MutS_II
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSLACP00000002004 MutS_II PF05188 3.8e-23 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
msh2-201 ENSLACT00000002018 1213 360aa ENSLACP00000002004

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSLACG00000001792latimeria_chalumnaeENSLACP0000001718710.65396.17193latimeria_chalumnaeENSLACP0000000200440.277823.3333
ENSLACG00000001792latimeria_chalumnaeENSLACP0000002353410.89015.44503latimeria_chalumnaeENSLACP0000000200428.888914.4444
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000395616.7929.27318latimeria_chalumnaeENSLACP0000000200437.222220.5556
ENSLACG00000001792latimeria_chalumnaeENSLACP000000006281.118570.447427latimeria_chalumnaeENSLACP000000020041.388890.555556

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200447.777824.7222caenorhabditis_elegansH26D21.2.120.259110.4829
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200459.722241.6667drosophila_melanogasterFBpp030120823.44616.3577
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200466.666749.4444ciona_intestinalisENSCINP0000001297125.450718.8759
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200485.555670.5556petromyzon_marinusENSPMAP0000000535385.793970.7521
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200485.833370eptatretus_burgeriENSEBUP0000000606132.45826.4706
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200487.574.1667callorhinchus_miliiENSCMIP0000000799133.689828.5562
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200400xiphophorus_maculatusENSXMAP0000003438700
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020041.388891.11111xiphophorus_maculatusENSXMAP000000253111.42451.1396
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200484.166767.5xiphophorus_maculatusENSXMAP0000001442332.337225.9338
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.166777.5electrophorus_electricusENSEEEP0000003566034.185329.7125
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888968.8889sparus_aurataENSSAUP0001006738832.196226.4392
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200484.166769.7222lates_calcariferENSLCAP0001003846533.3727.6432
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020049076.1111astyanax_mexicanusENSAMXP0000001633934.504829.18
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.3333haplochromis_burtoniENSHBUP0000003542429.9724.5754
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.722275.2778ictalurus_punctatusENSIPUP0000001247934.43528.8913
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200484.444468.3333poecilia_reticulataENSPREP0000000757132.44426.254
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.944466.6667oncorhynchus_mykissENSOMYP0000001130831.652425.7511
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888966.3889fundulus_heteroclitusENSFHEP0000002468957.633645.6107
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020044.444442.77778fundulus_heteroclitusENSFHEP000000335743.411512.1322
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.166777.2222lepisosteus_oculatusENSLOCP0000002012334.258329.6692
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.6111astatotilapia_callipteraENSACLP0000000310832.715426.9357
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.944467.7778cyclopterus_lumpusENSCLMP0000503884231.584626.1242
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200493.055684.1667xenopus_tropicalisENSXETP0000010031535.152131.7943
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.666767.2222salmo_salarENSSSAP0000009976230.309324.9485
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611169.1667seriola_dumeriliENSSDUP0000002195032.296126.7167
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.666766.1111esox_luciusENSELUP0000006906030.561324.7401
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.3333cottoperca_gobioENSCGOP0000001772332.085626.3102
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.8889dicentrarchus_labraxENSDLAP0000505444332.051326.4957
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200457.535.2778saccharomyces_cerevisiaeYOL090W21.47313.1743
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200400tetraodon_nigroviridisENSTNIP0000000450000
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.055667.2222tetraodon_nigroviridisENSTNIP0000000619631.707325.6628
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611167.5poecilia_latipinnaENSPLAP0000001940932.123825.9338
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611167.7778scophthalmus_maximusENSSMAP0000007018230.935325.0771
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888967.7778poecilia_formosaENSPFOP0000000985932.230526.0406
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611168.0556kryptolebias_marmoratusENSKMAP0000001569932.22726.2313
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.0556neolamprologus_brichardiENSNBRP0000001449934.246627.968
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200490.277877.2222carassius_auratusENSCARP0000001169934.908729.8604
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200485.277873.8889carassius_auratusENSCARP0000008229532.659628.2979
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611168.3333amphilophus_citrinellusENSACIP0000000414632.505426.5659
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611167.7778cyprinodon_variegatusENSCVAP0000000448332.123826.0406
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.666766.6667oncorhynchus_tshawytschaENSOTSP0000505283731.612925.8065
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200474.722261.3889nothobranchius_furzeriENSNFUP0001503600229.888924.5556
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888969.1667oreochromis_niloticusENSONIP0000007771432.059426.4331
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200457.545.8333labrus_bergyltaENSLBEP0000000033376.666761.1111
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.8889labrus_bergyltaENSLBEP0000003599332.085626.5241
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020043.888892.77778labrus_bergyltaENSLBEP000000002722.333331.66667
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611168.6111sander_luciopercaENSSLUP0000002482731.191725.5959
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.388966.9444salmo_truttaENSSTUP0000008227831.539325.9419
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.666764.7222hippocampus_comesENSHCOP0000001310031.078224.63
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888968.3333amphiprion_perculaENSAPEP0000003172032.299526.3102
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888968.0556oryzias_melastigmaENSOMEP0000000821632.33426.2313
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.055666.3889oryzias_latipesENSORLP0000001287332.012825.5889
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200488.333375.8333paramormyrops_kingsleyaeENSPKIP0000002638440.45834.7328
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888966.6667oryzias_sinensisENSOSIP0000004859330.753624.4399
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.6111maylandia_zebraENSMZEP0000500316332.017126.3607
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.055668.8889gadus_morhuaENSGMOP0000003291831.573426.188
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611168.8889larimichthys_croceaENSLCRP0000504982732.158126.4957
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.444477.7778erpetoichthys_calabaricusENSECRP0000002893134.512330.0107
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611168.8889seriola_lalandi_dorsalisENSSLDP0000002209132.192526.5241
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200472.559.7222acanthochromis_polyacanthusENSAPOP0000000078557.48947.3568
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200400acanthochromis_polyacanthusENSAPOP0000001583400
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200491.388977.7778danio_rerioENSDARP0000002776835.149629.9145
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200484.166768.3333betta_splendensENSBSLP0000005718132.371826.2821
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200477.777864.1667gasterosteus_aculeatusENSGACP0000000361930.769225.3846
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.611168.8889pundamilia_nyerereiENSPNYP0000000455932.192526.5241
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200491.111177.7778pygocentrus_nattereriENSPNAP0000002468834.893629.7872
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020048568.8889myripristis_murdjanENSMMDP0000505583532.727326.5241
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.333368.0556cynoglossus_semilaevisENSCSEP0000001508132.119926.2313
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.111166.1111hucho_huchoENSHHUP0000002094431.397925.5914
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200481.666766.6667oncorhynchus_kisutchENSOKIP0000506904030.753125.1046
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888968.3333amphiprion_ocellarisENSAOCP0000001643132.299526.3102
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200490.555676.3889scleropages_formosusENSSFOP0001507706034.717829.2865
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888968.8889mastacembelus_armatusENSMAMP0000000164532.299526.5241
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200483.888967.7778oryzias_javanicusENSOJAP0000003955432.33426.1242
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.722277.2222sinocyclocheilus_grahamiENSSGRP0000004194334.508529.7009
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.722276.9444sinocyclocheilus_grahamiENSSGRP0000008750934.143829.2812
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200484.166769.7222anabas_testudineusENSATEP0000006172832.406426.8449
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020046549.1667ciona_savignyiENSCSAVP0000000799524.631618.6316
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200480.277865.5556stegastes_partitusENSSPAP0000002476033.801227.6023
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200489.722276.9444cyprinus_carpio_carpioENSCCRP0000013565734.508529.594
ENSLACG00000001792latimeria_chalumnaeENSLACP000000020049077.2222cyprinus_carpio_carpioENSCCRP0000016861834.615429.7009
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200487.571.9444denticeps_clupeoidesENSDCDP0000003792633.582127.6119
ENSLACG00000001792latimeria_chalumnaeENSLACP0000000200493.055683.6111leptobrachium_leishanenseENSLLEP0000001851535.982832.3308

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression