RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSKMAG00000019332	Gene ID	108230160	Accession	-
Symbol	dennd4a	Alias	-	Full Name	DENN domain containing 4A
Status	Confidence	Length	29764 bases	Strand	Minus strand
Position	LWHD01000007.1 : 4293069 - 4322832	RNA binding domain	PPR_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSKMAP00000026080	PPR_3	PF13812	3.8e-06	1
ENSKMAP00000026110	PPR_3	PF13812	3.8e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSKMAT00000026407	10090	1686aa	ENSKMAP00000026080
-	ENSKMAT00000026437	10069	1679aa	ENSKMAP00000026110

Gene Model

Click here to download ENSKMAG00000019332's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSKMAG00000019332's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000028054	65.5086	55.7905	kryptolebias_marmoratus	ENSKMAP00000026080	77.1649	65.7177
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000006854	54.3832	42.0997	kryptolebias_marmoratus	ENSKMAP00000026080	61.4472	47.5682
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000007607	29.7089	14.5548	kryptolebias_marmoratus	ENSKMAP00000026080	20.5813	10.083
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000012241	30.5313	15.8604	kryptolebias_marmoratus	ENSKMAP00000026080	22.8351	11.8624

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	11.2693	10.9134	fundulus_heteroclitus	ENSFHEP00000004314	95	92
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.2301	87.6038	xiphophorus_maculatus	ENSXMAP00000024429	92.2849	87.6558
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	86.9514	81.9098	cyclopterus_lumpus	ENSCLMP00005000450	89.1728	84.0024
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.3488	88.1376	poecilia_reticulata	ENSPREP00000015280	92.4036	88.1899
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.5267	87.7817	haplochromis_burtoni	ENSHBUP00000011485	91.3349	86.6511
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.1115	87.6631	oreochromis_niloticus	ENSONIP00000019404	91.085	86.6862
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	93.4164	88.7307	sparus_aurata	ENSSAUP00010021495	91.623	87.0273
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.4081	87.841	astatotilapia_calliptera	ENSACLP00000023492	91.3247	86.8113
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	89.0273	83.5706	oryzias_latipes	ENSORLP00000032270	88.2941	82.8824
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	87.7224	83.1554	lates_calcarifer	ENSLCAP00010025071	87.3081	82.7627
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.7639	88.2562	dicentrarchus_labrax	ENSDLAP00005008654	89.7819	85.4191
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.9846	86.4176	oryzias_melastigma	ENSOMEP00000019693	91.5274	86.9332
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	89.3832	83.8671	takifugu_rubripes	ENSTRUP00000077331	88.5429	83.0787
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.5694	87.07	amphiprion_percula	ENSAPEP00000029061	93.7385	90.1166
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	85.2313	78.6477	hippocampus_comes	ENSHCOP00000011527	90.2072	83.2392
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.7473	86.0024	oryzias_javanicus	ENSOJAP00000029341	88.6443	84.0093
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	89.739	85.3499	neolamprologus_brichardi	ENSNBRP00000021577	91.1446	86.6867
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.8066	86.1803	scophthalmus_maximus	ENSSMAP00000024285	86.4483	82.044
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	76.038	70.4626	tetraodon_nigroviridis	ENSTNIP00000011260	85.0697	78.8321
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	87.3072	81.6726	betta_splendens	ENSBSLP00000030778	87.5669	81.9155
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	91.2218	86.5955	cyprinodon_variegatus	ENSCVAP00000016594	91.6021	86.9565
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	91.8149	87.0107	mastacembelus_armatus	ENSMAMP00000045815	89.7912	85.0928
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	88.0783	83.0961	labrus_bergylta	ENSLBEP00000020784	90.2187	85.1154
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.0949	86.1803	poecilia_latipinna	ENSPLAP00000014366	92.8484	88.8142
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	87.4259	81.9692	oryzias_sinensis	ENSOSIP00000046746	90.485	84.8373
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.3488	87.7817	maylandia_zebra	ENSMZEP00005030373	91.2661	86.7526
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	89.6797	85.4686	amphilophus_citrinellus	ENSACIP00000004616	91.5809	87.2804
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	87.5445	82.503	sander_lucioperca	ENSSLUP00000043076	85.6645	80.7313
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.1542	85.8244	pundamilia_nyererei	ENSPNYP00000018186	91.1271	86.7506
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.1115	87.4852	larimichthys_crocea	ENSLCRP00005024859	90.4485	85.9056
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.8066	87.1886	acanthochromis_polyacanthus	ENSAPOP00000025208	93.1265	89.4161
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.4081	88.0783	poecilia_formosa	ENSPFOP00000007517	92.4629	88.1306
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	90.0949	86.1803	seriola_lalandi_dorsalis	ENSSLDP00000030869	92.0606	88.0606
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	89.2052	83.2147	cynoglossus_semilaevis	ENSCSEP00000010540	87.0874	81.2391
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.2301	87.2479	cottoperca_gobio	ENSCGOP00000026768	89.8844	85.0289
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	93.2384	89.7983	stegastes_partitus	ENSSPAP00000025000	91.3422	87.9721
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	92.4081	88.3749	seriola_dumerili	ENSSDUP00000011240	89.8501	85.9285
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	86.7734	81.4947	gasterosteus_aculeatus	ENSGACP00000006444	81.2778	76.3333
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	93.535	89.739	amphiprion_ocellaris	ENSAOCP00000028006	91.3673	87.6593
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	84.4603	79.5967	anabas_testudineus	ENSATEP00000065851	86.1464	81.1857
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	93.7129	89.8577	nothobranchius_furzeri	ENSNFUP00015018086	93.9358	90.0713
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	7.71056	5.10083	ciona_intestinalis	ENSCINP00000030085	41.6667	27.5641
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	6.9395	5.33808	callorhinchus_milii	ENSCMIP00000003645	63.587	48.913
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	82.4437	72.5979	esox_lucius	ENSELUP00000047785	64.2032	56.5358
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	82.0285	72.8944	oncorhynchus_kisutch	ENSOKIP00005044775	58.9765	52.4094
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	77.8173	69.4543	oncorhynchus_mykiss	ENSOMYP00000112239	78.7515	70.2881
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	82.8588	73.6655	salmo_salar	ENSSSAP00000021133	71.7514	63.7904
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	83.1554	73.7248	salmo_trutta	ENSSTUP00000034440	70.2757	62.3058
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	84.4009	76.5718	gadus_morhua	ENSGMOP00000034270	80.0788	72.6505
ENSKMAG00000019332	kryptolebias_marmoratus	ENSKMAP00000026080	88.0783	83.5706	myripristis_murdjan	ENSMMDP00005020775	89.5657	84.9819

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression