RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSKMAG00000011397	Gene ID	108230899	Accession	-
Symbol		Alias	-	Full Name	uncharacterized LOC108230899
Status	Confidence	Length	4402 bases	Strand	Minus strand
Position	LWHD01000010.1 : 2035135 - 2039536	RNA binding domain	PABP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSKMAP00000015227	PABP	PF00658	7.9e-45	1
ENSKMAP00000015227	PABP	PF00658	7.9e-45	2
ENSKMAP00000015227	PABP	PF00658	7.9e-45	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSKMAT00000015447	2908	212aa	ENSKMAP00000015227

Gene Model

Click here to download ENSKMAG00000011397's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSKMAG00000011397's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSKMAG00000011397

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	87.2642	77.8302	fundulus_heteroclitus	ENSFHEP00000006678	85.6481	76.3889
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	86.7924	80.1887	xiphophorus_maculatus	ENSXMAP00000022074	85.1852	78.7037
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	86.7924	78.7736	cyclopterus_lumpus	ENSCLMP00005042006	80.3493	72.9258
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	79.717	73.1132	poecilia_reticulata	ENSPREP00000002738	83.2512	76.3547
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	85.3774	78.3019	haplochromis_burtoni	ENSHBUP00000025414	52.6163	48.2558
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.1509	80.6604	oreochromis_niloticus	ENSONIP00000029092	87.907	79.5349
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	83.9623	75.4717	sparus_aurata	ENSSAUP00010050451	78.4141	70.4846
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	88.2076	79.717	astatotilapia_calliptera	ENSACLP00000041475	86.9767	78.6047
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.1509	83.0189	lates_calcarifer	ENSLCAP00010004525	88.7324	82.6291
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.1509	81.1321	dicentrarchus_labrax	ENSDLAP00005068825	88.3178	80.3738
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	77.8302	67.9245	takifugu_rubripes	ENSTRUP00000061340	73.0089	63.7168
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	87.7358	80.6604	amphiprion_percula	ENSAPEP00000029514	86.9159	79.9065
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	73.5849	68.3962	neolamprologus_brichardi	ENSNBRP00000008616	67.5325	62.7706
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	82.0755	67.9245	tetraodon_nigroviridis	ENSTNIP00000005128	80.5556	66.6667
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	87.2642	74.5283	betta_splendens	ENSBSLP00000032681	85.6481	73.1481
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	88.2076	78.3019	cyprinodon_variegatus	ENSCVAP00000019141	86.5741	76.8519
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.6226	82.5472	mastacembelus_armatus	ENSMAMP00000026249	88.785	81.7757
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	88.6792	80.6604	labrus_bergylta	ENSLBEP00000037305	83.9286	76.3393
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	87.7358	79.717	poecilia_latipinna	ENSPLAP00000020349	86.1111	78.2407
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	86.3208	79.2453	sander_lucioperca	ENSSLUP00000032419	82.8054	76.0181
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	70.283	63.2075	pundamilia_nyererei	ENSPNYP00000006161	80.5405	72.4324
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	77.8302	71.6981	larimichthys_crocea	ENSLCRP00005052905	81.2808	74.8768
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	88.2076	81.1321	acanthochromis_polyacanthus	ENSAPOP00000034558	87.3832	80.3738
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	87.7358	79.717	poecilia_formosa	ENSPFOP00000026315	86.5116	78.6047
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.1509	80.6604	seriola_lalandi_dorsalis	ENSSLDP00000000413	87.907	79.5349
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	73.5849	66.0377	cynoglossus_semilaevis	ENSCSEP00000001942	83.871	75.2688
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.1509	82.5472	stegastes_partitus	ENSSPAP00000020075	88.3178	81.7757
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	89.1509	81.1321	seriola_dumerili	ENSSDUP00000020751	87.907	80
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	87.2642	80.1887	amphiprion_ocellaris	ENSAOCP00000015162	86.4486	79.4393
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	88.6792	78.7736	anabas_testudineus	ENSATEP00000019824	87.4419	77.6744
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	78.7736	70.283	nothobranchius_furzeri	ENSNFUP00015007374	90.2703	80.5405
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	55.6604	38.2075	callorhinchus_milii	ENSCMIP00000033430	44.697	30.6818
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	55.6604	41.5094	lepisosteus_oculatus	ENSLOCP00000003630	73.75	55
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	79.717	68.8679	esox_lucius	ENSELUP00000000105	63.7736	55.0943
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	83.9623	73.1132	oncorhynchus_kisutch	ENSOKIP00005104778	78.7611	68.5841
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	83.9623	73.1132	oncorhynchus_mykiss	ENSOMYP00000083163	78.0702	67.9825
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	61.3208	50.4717	salmo_salar	ENSSSAP00000025921	72.6257	59.7765
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	83.9623	73.5849	salmo_trutta	ENSSTUP00000099795	78.0702	68.4211
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	75	62.7358	gadus_morhua	ENSGMOP00000031099	56.9892	47.6702
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	66.9811	49.0566	erpetoichthys_calabaricus	ENSECRP00000017933	48.2993	35.3741
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	83.4906	73.1132	hucho_hucho	ENSHHUP00000070473	78.6667	68.8889
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	83.9623	73.5849	oncorhynchus_tshawytscha	ENSOTSP00005048319	78.0702	68.4211
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	86.3208	78.7736	myripristis_murdjan	ENSMMDP00005002226	85.514	78.0374
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	77.8302	62.7358	scleropages_formosus	ENSSFOP00015001953	74.3243	59.9099
ENSKMAG00000011397	kryptolebias_marmoratus	ENSKMAP00000015227	75	58.9623	paramormyrops_kingsleyae	ENSPKIP00000020579	70.0441	55.0661

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression