Description

Ensembl ID ENSKMAG00000000639 Gene ID 108245000 Accession -
Symbol U2AF1 Alias - Full Name splicing factor U2AF 35 kDa subunit
Status Confidence Length 6425 bases Strand Plus strand
Position LWHD01000158.1 : 161433 - 167857 RNA binding domain zf-CCCH , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSKMAP00000000806 zf-CCCH PF00642 6.8e-14 1
ENSKMAP00000000806 zf-CCCH PF00642 6.8e-14 2
ENSKMAP00000000806 RRM_1 PF00076 2.9e-06 3
ENSKMAP00000000829 zf-CCCH PF00642 5.6e-07 1
ENSKMAP00000000829 RRM_1 PF00076 2.5e-06 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
u2af1-201 ENSKMAT00000000836 1397 227aa ENSKMAP00000000806
u2af1-202 ENSKMAT00000000861 627 208aa ENSKMAP00000000829

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000002986072.202267.87kryptolebias_marmoratusENSKMAP0000000080688.105782.8194
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000001327421.186414.5763kryptolebias_marmoratusENSKMAP0000000080655.066137.8855

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559597.3568fundulus_heteroclitusENSFHEP0000003254499.559597.3568
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118997.3568xiphophorus_maculatusENSXMAP0000000815398.684296.9298
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237993.8326cyclopterus_lumpusENSCLMP0000503127495.299191.0256
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118997.3568poecilia_reticulataENSPREP0000001914598.684296.9298
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080695.154292.511oreochromis_niloticusENSONIP0000006410894.736892.1053
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784sparus_aurataENSSAUP0001004890810098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379astatotilapia_callipteraENSACLP0000003665299.559598.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379oryzias_latipesENSORLP0000000777799.122897.807
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080694.713792.0705lates_calcariferENSLCAP0001004553193.886591.2664
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.51189.4273dicentrarchus_labraxENSDLAP0000502578492.105389.0351
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.070588.5463dicentrarchus_labraxENSDLAP0000501645183.935780.7229
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784oryzias_melastigmaENSOMEP0000000817410098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080688.986886.7841takifugu_rubripesENSTRUP0000007490487.06984.9138
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.2379amphiprion_perculaENSAPEP0000002211510098.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118997.3568hippocampus_comesENSHCOP0000000457999.118997.3568
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.2379oryzias_javanicusENSOJAP0000000958510098.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379neolamprologus_brichardiENSNBRP0000000470799.559598.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.951591.63scophthalmus_maximusENSSMAP0000004758890.948389.6552
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379tetraodon_nigroviridisENSTNIP0000001114199.559598.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559597.3568cyprinodon_variegatusENSCVAP0000002831099.559597.3568
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080695.154292.0705mastacembelus_armatusENSMAMP0000003269895.154292.0705
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118997.3568labrus_bergyltaENSLBEP0000003308798.684296.9298
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118997.3568poecilia_latipinnaENSPLAP0000000001698.684296.9298
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784oryzias_sinensisENSOSIP0000002518110098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379maylandia_zebraENSMZEP0000502373099.559598.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080634.801832.5991amphilophus_citrinellusENSACIP0000002953892.941287.0588
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.951590.7489sander_luciopercaENSSLUP0000002198782.421980.4688
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379pundamilia_nyerereiENSPNYP0000003050499.559598.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784larimichthys_croceaENSLCRP0000500891510098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784acanthochromis_polyacanthusENSAPOP0000002561710098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118997.3568poecilia_formosaENSPFOP0000001175598.684296.9298
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080696.916393.3921seriola_lalandi_dorsalisENSSLDP0000002501694.827691.3793
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.6784cynoglossus_semilaevisENSCSEP0000000165599.559598.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080695.594792.9515cottoperca_gobioENSCGOP0000004688095.175492.5439
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784stegastes_partitusENSSPAP0000001501798.695797.3913
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784seriola_dumeriliENSSDUP0000000704110098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237995.5947gasterosteus_aculeatusENSGACP0000001928997.80795.1754
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080676.65263.8767caenorhabditis_elegansY116A8C.35a.261.052650.8772
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.6784amphiprion_ocellarisENSAOCP0000000804210098.6784
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379anabas_testudineusENSATEP0000002584899.559598.2379
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.678496.0352nothobranchius_furzeriENSNFUP0001505298199.11596.4602
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080681.938374.8899ciona_intestinalisENSCINP0000000842585.321177.9817
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080687.224778.4141drosophila_melanogasterFBpp03056007567.4242
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080677.092573.5683eptatretus_burgeriENSEBUP0000000366287.064783.0846
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080688.105781.0573eptatretus_burgeriENSEBUP0000002047370.422564.7887
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080691.189486.7841callorhinchus_miliiENSCMIP0000001586976.383872.6937
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080683.700483.2599lepisosteus_oculatusENSLOCP0000000133998.958398.4375
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237994.7137clupea_harengusENSCHAP0000000019776.109273.3788
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.356893.3921danio_rerioENSDARP0000000558288.484.8
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080634.801832.5991carassius_auratusENSCARP0000000156992.941287.0588
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.356893.3921astyanax_mexicanusENSAMXP0000005233293.248989.4515
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559598.2379ictalurus_punctatusENSIPUP0000002059999.122897.807
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080675.330468.2819esox_luciusENSELUP0000001960878.801871.4286
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080662.995660.7929oncorhynchus_kisutchENSOKIP0000507121088.271685.1852
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080693.832689.4273oncorhynchus_mykissENSOMYP0000003000878.308874.6324
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080690.748986.3436oncorhynchus_mykissENSOMYP0000000137387.288183.0508
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.559596.4758salmo_salarENSSSAP0000014406592.622989.7541
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237996.4758salmo_truttaENSSTUP0000002643296.120794.3966
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080695.154291.63xenopus_tropicalisENSXETP0000010385888.888985.5967
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080685.462678.4141crocodylus_porosusENSCPRP0000502364555.270750.7122
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080677.973670.9251anas_platyrhynchos_platyrhynchosENSAPLP0000003265457.654752.443
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080695.594788.1057serinus_canariaENSSCAP0000001529778.057671.9424
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080684.581578.4141meleagris_gallopavoENSMGAP0000001545180.672374.7899
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080694.273188.5463parus_majorENSPMJP0000001413745.435242.6752
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080678.854674.4493choloepus_hoffmanniENSCHOP0000001004690.40485.3535
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352sarcophilus_harrisiiENSSHAP0000004104690.725887.9032
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080693.392188.1057callithrix_jacchusENSCJAP0000008191477.090972.7273
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.356893.3921cercocebus_atysENSCATP0000004496889.837486.1789
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352macaca_fascicularisENSMFAP0000001863793.7590.8333
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.356893.3921macaca_nemestrinaENSMNEP0000001203089.837486.1789
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080688.105785.022pan_troglodytesENSPTRP0000009192482.987580.083
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080688.105785.022pan_troglodytesENSPTRP0000008653082.987580.083
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352pongo_abeliiENSPPYP0000002904393.7590.8333
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.51188.5463vulpes_vulpesENSVVUP0000002348187.136983.4025
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.070586.7841ursus_americanusENSUAMP0000001164886.008281.07
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080644.493442.7313ailuropoda_melanoleucaENSAMEP0000000718675.373172.3881
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080661.233558.1498mustela_putorius_furoENSMPUP0000000963091.447486.8421
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352delphinapterus_leucasENSDLEP0000002943294.936791.9831
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352equus_asinusENSEASP0000505051293.7590.8333
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080670.044165.6388camelus_dromedariusENSCDRP0000502411888.826883.2402
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080685.02282.3789camelus_dromedariusENSCDRP0000500592690.610387.7934
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080674.008868.2819ochotona_princepsENSOPRP0000001294270.588265.1261
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080691.6387.2247dipodomys_ordiiENSDORP0000000019389.655285.3448
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352ovis_aries_rambouilletENSOARP0002000715994.936791.9831
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080695.594789.8678rattus_norvegicusENSRNOP0000008250990.416785
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352monodelphis_domesticaENSMODP0000003900290.725887.9032
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.797495.1542erpetoichthys_calabaricusENSECRP0000000521488.095285.7143
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080662.555160.7929pelodiscus_sinensisENSPSIP0000000786210097.1831
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080685.02279.7357anolis_carolinensisENSACAP0000003163764.983260.9428
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080677.092571.8062vombatus_ursinusENSVURP0001001493193.085186.7021
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080685.462681.4978ursus_maritimusENSUMAP0000003550077.911674.2972
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352bos_indicus_hybridENSBIXP0000503865994.936791.9831
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.356893.8326microcebus_murinusENSMICP0000003463890.946587.6543
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352phocoena_sinusENSPSNP0000001364794.936791.9831
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080696.035289.4273geospiza_fortisENSGFOP0000002189178.417373.0216
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.51189.4273tupaia_belangeriENSTBEP0000000038694.170491.0314
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237994.7137rhinopithecus_bietiENSRBIP0000001027289.919486.6936
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080694.713788.1057ficedula_albicollisENSFALP0000002929377.338171.9424
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080680.616773.1278anser_brachyrhynchusENSABRP0000001721743.675439.6181
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352salvator_merianaeENSSMRP0000002980095.744792.766
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.356893.8326propithecus_coquereliENSPCOP0000001497090.573887.2951
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080682.378976.652ciona_savignyiENSCSAVP0000000058888.207682.0755
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080691.6387.2247struthio_camelus_australisENSSCUP0000001649193.693789.1892
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.797495.1542hucho_huchoENSHHUP0000009084293.670991.1392
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080696.916393.8326hucho_huchoENSHHUP0000000895394.017191.0256
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237993.3921hucho_huchoENSHHUP0000008419191.393486.8852
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352microtus_ochrogasterENSMOCP0000000448694.142391.2134
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.951588.1057jaculus_jaculusENSJJAP0000000060389.029584.3882
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080696.035291.1894denticeps_clupeoidesENSDCDP0000001206471.009867.4267
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.070588.1057denticeps_clupeoidesENSDCDP0000003313093.303689.2857
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352gopherus_evgoodeiENSGEVP0000500094391.093188.2591
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352monodon_monocerosENSMMNP0001500341794.936791.9831
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080667.841464.7577bison_bison_bisonENSBBBP0000000602893.902489.6341
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080694.713790.3084saimiri_boliviensis_boliviensisENSSBOP0000002106276.241172.695
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080667.841464.7577bos_mutusENSBMUP0000001682993.902489.6341
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080662.555159.0308panthera_tigris_altaicaENSPTIP0000001508987.654382.716
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080633.920729.0749sinocyclocheilus_grahamiENSSGRP0000001883779.381468.0412
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080631.277528.6344sinocyclocheilus_grahamiENSSGRP0000009962681.609274.7126
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080696.475892.511carlito_syrichtaENSTSYP0000000625790.871487.1369
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.51189.4273nomascus_leucogenysENSNLEP0000004406693.333390.2222
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237994.7137rhinopithecus_roxellanaENSRROP0000002587689.919486.6936
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352terrapene_carolina_triunguisENSTMTP0000001704090.361487.5502
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080686.784181.9383cyprinus_carpio_carpioENSCCRP0000007368282.426877.8243
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080683.259978.8546coturnix_japonicaENSCJPP0000500996661.764758.4967
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080631.277528.6344peromyscus_maniculatus_bairdiiENSPEMP0000003200482.558175.5814
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080692.070587.2247ictidomys_tridecemlineatusENSSTOP0000002732986.008281.4815
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.678496.4758oncorhynchus_tshawytschaENSOTSP0000502823894.514892.4051
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.797495.5947oncorhynchus_tshawytschaENSOTSP0000500141395.689793.5345
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080610098.2379myripristis_murdjanENSMMDP0000500190598.268496.5368
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080698.237995.5947scleropages_formosusENSSFOP0001501930896.536893.9394
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080697.797493.3921myotis_lucifugusENSMLUP0000001342693.277389.0756
ENSKMAG00000000639kryptolebias_marmoratusENSKMAP0000000080699.118996.0352aotus_nancymaaeENSANAP0000001636593.7590.8333

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression