RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSIPUG00000016782	Gene ID	108277913	Accession	-
Symbol	mrm3a	Alias	-	Full Name	mitochondrial rRNA methyltransferase 3
Status	Confidence	Length	6181 bases	Strand	Minus strand
Position	17 : 21884332 - 21890512	RNA binding domain	SpoU_methylase
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSIPUP00000024808	SpoU_methylase	PF00588	3.7e-18	1
ENSIPUP00000024817	SpoU_methylase	PF00588	4.6e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
mrm3-201	ENSIPUT00000025842	1254	417aa	ENSIPUP00000024808
mrm3-202	ENSIPUT00000025851	1350	449aa	ENSIPUP00000024817

Gene Model

Click here to download ENSIPUG00000016782's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSIPUG00000016782's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000008501	56.3474	38.9755	ictalurus_punctatus	ENSIPUP00000024817	56.3474	38.9755

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	41.4254	24.4989	drosophila_melanogaster	FBpp0074739	45.7002	27.027
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.3742	51.2249	clupea_harengus	ENSCHAP00000007860	66.0215	49.4624
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	72.6058	59.6882	danio_rerio	ENSDARP00000119941	73.5892	60.4966
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	71.2695	56.3474	carassius_auratus	ENSCARP00000103373	75.4717	59.6698
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	69.9332	58.1292	astyanax_mexicanus	ENSAMXP00000030246	71.2018	59.1837
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	64.3653	48.5523	gadus_morhua	ENSGMOP00000032852	62.5541	47.1861
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.147	51.0022	fundulus_heteroclitus	ENSFHEP00000002513	65.8537	50.7761
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.0379	53.2294	cyclopterus_lumpus	ENSCLMP00005017999	67.6404	53.7079
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.4833	51.0022	haplochromis_burtoni	ENSHBUP00000031380	66.5934	50.3297
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.1515	52.3385	oryzias_latipes	ENSORLP00000039093	68.9189	52.9279
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.5924	51.0022	xiphophorus_maculatus	ENSXMAP00000019155	66.4444	50.8889
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.147	52.3385	sparus_aurata	ENSSAUP00010001739	65.1316	51.5351
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	60.5791	42.7617	bos_taurus	ENSBTAP00000025502	65.8596	46.4891
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	60.3563	43.6526	erpetoichthys_calabaricus	ENSECRP00000010754	59.0414	42.7015
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	50.5568	astatotilapia_calliptera	ENSACLP00000008580	65.5022	49.5633
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	56.7929	40.98	anolis_carolinensis	ENSACAP00000015695	62.8079	45.3202
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.2606	51.2249	dicentrarchus_labrax	ENSDLAP00005054431	64.6681	49.2505
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.5969	52.784	salmo_trutta	ENSSTUP00000109906	67.5439	51.9737
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	50.5568	kryptolebias_marmoratus	ENSKMAP00000025730	69.4444	52.5463
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.5924	52.5612	amphilophus_citrinellus	ENSACIP00000010103	66.5924	52.5612
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	57.0156	41.6481	ornithorhynchus_anatinus	ENSOANP00000015733	59.3968	43.3875
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	51.0022	poecilia_latipinna	ENSPLAP00000029116	66.0793	50.4405
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	51.2249	poecilia_formosa	ENSPFOP00000010304	66.0793	50.6608
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	60.8018	42.9844	bos_indicus_hybrid	ENSBIXP00005009222	65.942	46.6184
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.4833	51.0022	neolamprologus_brichardi	ENSNBRP00000026368	67.184	50.7761
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	52.3385	larimichthys_crocea	ENSLCRP00005009954	67.8733	53.1674
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.4833	51.4477	oreochromis_niloticus	ENSONIP00000016543	66.7401	50.8811
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	60.8018	42.9844	bos_mutus	ENSBMUP00000012631	66.1017	46.7312
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.4833	53.0067	scophthalmus_maximus	ENSSMAP00000011680	67.0354	52.6549
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	56.1247	42.0935	strigops_habroptila	ENSSHBP00005015715	61.9165	46.4373
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	65.9243	50.1114	pundamilia_nyererei	ENSPNYP00000022263	66.0714	50.2232
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	65.7016	50.1114	pundamilia_nyererei	ENSPNYP00000001283	68.1293	51.963
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	56.3474	42.7617	salvator_merianae	ENSSMRP00000002334	60.3819	45.8234
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.706	51.2249	mastacembelus_armatus	ENSMAMP00000027212	67.4058	50.9978
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.4833	51.2249	cottoperca_gobio	ENSCGOP00000053648	65.4428	49.676
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	59.9109	42.9844	chrysemys_picta_bellii	ENSCPBP00000022048	56.6316	40.6316
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	59.6882	43.6526	chelonoidis_abingdonii	ENSCABP00000030657	63.5071	46.4455
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.0379	50.7795	maylandia_zebra	ENSMZEP00005010399	66.1538	50.1099
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	60.3563	41.2027	catagonus_wagneri	ENSCWAP00000002777	66.0976	45.122
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.5924	50.7795	labrus_bergylta	ENSLBEP00000028041	66.0044	50.3311
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.2606	51.6704	oryzias_javanicus	ENSOJAP00000042436	69.4253	53.3333
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.9287	52.3385	stegastes_partitus	ENSSPAP00000029629	66.1605	50.9761
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	51.8931	myripristis_murdjan	ENSMMDP00005025823	64.6552	50.2155
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	65.9243	50.3341	oryzias_melastigma	ENSOMEP00000003317	68.046	51.954
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	69.0423	53.0067	hucho_hucho	ENSHHUP00000060496	65.5391	50.3171
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	52.3385	amphiprion_ocellaris	ENSAOCP00000031744	65.6455	51.4223
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	58.5746	41.8708	leptobrachium_leishanense	ENSLLEP00000041273	62.1749	44.4444
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	66.8151	48.7751	cynoglossus_semilaevis	ENSCSEP00000021168	64.9351	47.4026
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.3742	53.0067	seriola_lalandi_dorsalis	ENSSLDP00000013878	66.4502	51.5152
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.3742	53.0067	seriola_lalandi_dorsalis	ENSSLDP00000013776	66.4502	51.5152
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	65.4788	50.5568	anabas_testudineus	ENSATEP00000032343	64.1921	49.5633
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	62.1381	47.8842	hippocampus_comes	ENSHCOP00000025464	64.8837	50
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	72.6058	57.461	sinocyclocheilus_grahami	ENSSGRP00000025969	72.9306	57.7181
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	70.8241	56.1247	cyprinus_carpio_carpio	ENSCCRP00000115315	74.2991	58.8785
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.3742	52.5612	oryzias_sinensis	ENSOSIP00000038930	69.1441	53.1532
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	59.6882	43.6526	terrapene_carolina_triunguis	ENSTMTP00000031711	62.3256	45.5814
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	67.2606	52.3385	amphiprion_percula	ENSAPEP00000013213	66.0832	51.4223
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	65.4788	51.4477	scleropages_formosus	ENSSFOP00015066527	60.7438	47.7273
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	60.5791	43.2071	gopherus_evgoodei	ENSGEVP00005019179	64.3026	45.8629
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	68.3742	52.3385	nothobranchius_furzeri	ENSNFUP00015005313	67.7704	51.8764
ENSIPUG00000016782	ictalurus_punctatus	ENSIPUP00000024817	64.1425	48.5523	acanthochromis_polyacanthus	ENSAPOP00000001241	65.3061	49.4331

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression