RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSHHUG00000039390	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1434 bases	Strand	Minus strand
Position	QNTS01000205.1 : 1044255 - 1045688	RNA binding domain	Ribosomal_S18
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSHHUP00000066808	Ribosomal_S18	PF01084	1.4e-11	1
ENSHHUP00000066819	Ribosomal_S18	PF01084	7.3e-11	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSHHUT00000069061	321	106aa	ENSHHUP00000066808
-	ENSHHUT00000069071	216	71aa	ENSHHUP00000066819

Gene Model

Click here to download ENSHHUG00000039390's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSHHUG00000039390's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000039390

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000039390	hucho_hucho	ENSHHUP00000066808	45.283	36.7925	oncorhynchus_mykiss	ENSOMYP00000060877	51.6129	41.9355
ENSHHUG00000039390	hucho_hucho	ENSHHUP00000066808	48.1132	44.3396	salmo_salar	ENSSSAP00000094764	78.4615	72.3077

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression