RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSHHUG00000022743	Gene ID		Accession	-
Symbol	mrpl42	Alias	-	Full Name	mitochondrial ribosomal protein L42
Status	Confidence	Length	3447 bases	Strand	Plus strand
Position	QNTS01000039.1 : 233306 - 236752	RNA binding domain	MRP-S32
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSHHUP00000036211	MRP-S32	PF10210	1.2e-33	1
ENSHHUP00000036205	MRP-S32	PF10210	1.1e-27	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
mrpl42-201	ENSHHUT00000037644	447	148aa	ENSHHUP00000036205
mrpl42-202	ENSHHUT00000037651	578	144aa	ENSHHUP00000036211

Gene Model

Click here to download ENSHHUG00000022743's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSHHUG00000022743's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000003996	97.973	95.2703	hucho_hucho	ENSHHUP00000036205	97.973	95.2703

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	56.0811	38.5135	petromyzon_marinus	ENSPMAP00000008907	53.5484	36.7742
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	45.2703	32.4324	eptatretus_burgeri	ENSEBUP00000008669	50	35.8209
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	43.9189	38.5135	lepisosteus_oculatus	ENSLOCP00000018804	51.5873	45.2381
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	71.6216	61.4865	clupea_harengus	ENSCHAP00000023444	71.1409	61.0738
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	65.5405	53.3784	danio_rerio	ENSDARP00000103369	67.3611	54.8611
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	54.0541	40.5405	astyanax_mexicanus	ENSAMXP00000049896	58.3942	43.7956
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	62.1622	50	carassius_auratus	ENSCARP00000121180	70.229	56.4885
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	59.4595	49.3243	carassius_auratus	ENSCARP00000018875	67.1756	55.7252
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	56.0811	43.2432	ictalurus_punctatus	ENSIPUP00000022705	56.4626	43.5374
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	58.7838	44.5946	electrophorus_electricus	ENSEEEP00000016677	60.4167	45.8333
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	86.4865	85.8108	oncorhynchus_kisutch	ENSOKIP00005005582	75.2941	74.7059
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	87.8378	87.8378	oncorhynchus_kisutch	ENSOKIP00005020946	90.2778	90.2778
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	85.1351	79.7297	esox_lucius	ENSELUP00000000369	86.3014	80.8219
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	87.8378	86.4865	oncorhynchus_mykiss	ENSOMYP00000024113	76.4706	75.2941
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	88.5135	87.8378	salmo_salar	ENSSSAP00000027206	97.037	96.2963
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	87.8378	86.4865	salmo_trutta	ENSSTUP00000095011	96.2963	94.8148
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	85.1351	85.1351	salmo_trutta	ENSSTUP00000099184	87.5	87.5
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	63.5135	54.7297	gadus_morhua	ENSGMOP00000003111	65.2778	56.25
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	65.5405	52.027	fundulus_heteroclitus	ENSFHEP00000032296	66.8966	53.1034
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	57.4324	47.973	poecilia_reticulata	ENSPREP00000017834	64.3939	53.7879
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.2162	52.027	oryzias_latipes	ENSORLP00000016925	57.6471	45.2941
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	60.1351	cyclopterus_lumpus	ENSCLMP00005027382	70.6294	62.2378
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	56.0811	haplochromis_burtoni	ENSHBUP00000014136	70.1389	57.6389
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	70.2703	60.1351	sparus_aurata	ENSSAUP00010012731	71.7241	61.3793
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	70.2703	59.4595	lates_calcarifer	ENSLCAP00010013384	71.7241	60.6897
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	56.0811	astatotilapia_calliptera	ENSACLP00000039835	70.1389	57.6389
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	55.4054	40.5405	xenopus_tropicalis	ENSXETP00000062680	55.4054	40.5405
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	56.7568	45.9459	meleagris_gallopavo	ENSMGAP00000011853	63.6364	51.5152
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	54.7297	41.8919	ornithorhynchus_anatinus	ENSOANP00000049592	53.6424	41.0596
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	60.1351	46.6216	anolis_carolinensis	ENSACAP00000012350	60.9589	47.2603
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.9189	56.7568	cyprinodon_variegatus	ENSCVAP00000001619	70.3448	57.931
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.2162	53.3784	oryzias_melastigma	ENSOMEP00000009500	67.5862	54.4828
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.8919	56.0811	takifugu_rubripes	ENSTRUP00000056347	68.2759	57.2414
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.8919	55.4054	neolamprologus_brichardi	ENSNBRP00000004152	68.75	56.9444
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	67.5676	56.0811	kryptolebias_marmoratus	ENSKMAP00000018358	69.9301	58.042
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	71.6216	60.8108	seriola_dumerili	ENSSDUP00000008110	73.1034	62.069
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	62.8378	45.2703	pygocentrus_nattereri	ENSPNAP00000014798	64.1379	46.2069
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.8919	55.4054	poecilia_latipinna	ENSPLAP00000000435	68.2759	56.5517
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.2162	55.4054	poecilia_formosa	ENSPFOP00000016595	66.6667	55.7823
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	60.8108	53.3784	scophthalmus_maximus	ENSSMAP00000000403	59.6026	52.3179
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	54.0541	45.9459	cottoperca_gobio	ENSCGOP00000022848	66.1157	56.1983
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	69.5946	58.7838	labrus_bergylta	ENSLBEP00000038398	70.068	59.1837
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	58.1081	42.5676	salvator_merianae	ENSSMRP00000014221	59.3103	43.4483
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	70.9459	56.0811	hippocampus_comes	ENSHCOP00000011273	72.9167	57.6389
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	52.027	45.9459	gasterosteus_aculeatus	ENSGACP00000024868	79.3814	70.1031
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	58.7838	45.9459	coturnix_japonica	ENSCJPP00005005114	59.589	46.5753
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	70.2703	59.4595	amphiprion_ocellaris	ENSAOCP00000007777	72.7273	61.5385
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	70.9459	59.4595	anabas_testudineus	ENSATEP00000053347	72.4138	60.6897
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	67.5676	57.4324	mastacembelus_armatus	ENSMAMP00000014330	71.9424	61.1511
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	56.7568	denticeps_clupeoides	ENSDCDP00000051145	61.2121	50.9091
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	57.4324	betta_splendens	ENSBSLP00000026176	62.3457	52.4691
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	71.6216	61.4865	seriola_lalandi_dorsalis	ENSSLDP00000012760	73.1034	62.7586
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	72.2973	64.1892	myripristis_murdjan	ENSMMDP00005009010	72.7891	64.6258
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	67.5676	59.4595	sander_lucioperca	ENSSLUP00000026108	68.9655	60.6897
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	87.1622	86.4865	oncorhynchus_tshawytscha	ENSOTSP00005102420	75.8824	75.2941
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	87.1622	86.4865	oncorhynchus_tshawytscha	ENSOTSP00005024528	92.1429	91.4286
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.9189	59.4595	larimichthys_crocea	ENSLCRP00005058638	70.3448	60.6897
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	63.5135	55.4054	paramormyrops_kingsleyae	ENSPKIP00000010939	64.3836	56.1644
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	64.8649	49.3243	cynoglossus_semilaevis	ENSCSEP00000015657	68.0851	51.773
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	56.0811	pundamilia_nyererei	ENSPNYP00000012619	70.1389	57.6389
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	58.7838	54.0541	nothobranchius_furzeri	ENSNFUP00015009577	66.9231	61.5385
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	66.8919	52.7027	oryzias_sinensis	ENSOSIP00000042406	68.75	54.1667
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	56.0811	maylandia_zebra	ENSMZEP00005011382	67.3333	55.3333
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	61.4865	48.6486	sinocyclocheilus_grahami	ENSSGRP00000111496	66.4234	52.5547
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	68.2432	56.7568	acanthochromis_polyacanthus	ENSAPOP00000008560	70.1389	58.3333
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	69.5946	59.4595	amphiprion_percula	ENSAPEP00000027492	72.028	61.5385
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	65.5405	52.7027	cyprinus_carpio_carpio	ENSCCRP00000075668	65.1007	52.349
ENSHHUG00000022743	hucho_hucho	ENSHHUP00000036205	52.027	42.5676	oryzias_javanicus	ENSOJAP00000046964	70	57.2727

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression