RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSHHUG00000002439	Gene ID		Accession	-
Symbol	mrpl42	Alias	-	Full Name	mitochondrial ribosomal protein L42
Status	Confidence	Length	1902 bases	Strand	Minus strand
Position	QNTS01000660.1 : 617879 - 619780	RNA binding domain	MRP-S32
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSHHUP00000003996	MRP-S32	PF10210	3.2e-28	1
ENSHHUP00000003975	MRP-S32	PF10210	3.7e-28	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
mrpl42-201	ENSHHUT00000004106	417	138aa	ENSHHUP00000003975
mrpl42-202	ENSHHUT00000004127	447	148aa	ENSHHUP00000003996

Gene Model

Click here to download ENSHHUG00000002439's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSHHUG00000002439's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000036205	97.973	95.2703	hucho_hucho	ENSHHUP00000003996	97.973	95.2703

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	56.7568	38.5135	petromyzon_marinus	ENSPMAP00000008907	54.1936	36.7742
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	45.9459	32.4324	eptatretus_burgeri	ENSEBUP00000008669	50.7463	35.8209
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	45.2703	38.5135	lepisosteus_oculatus	ENSLOCP00000018804	53.1746	45.2381
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	71.6216	60.1351	clupea_harengus	ENSCHAP00000023444	71.1409	59.7315
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	65.5405	52.7027	danio_rerio	ENSDARP00000103369	67.3611	54.1667
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	54.0541	40.5405	astyanax_mexicanus	ENSAMXP00000049896	58.3942	43.7956
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	61.4865	50	carassius_auratus	ENSCARP00000121180	69.4657	56.4885
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	59.4595	49.3243	carassius_auratus	ENSCARP00000018875	67.1756	55.7252
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	55.4054	42.5676	ictalurus_punctatus	ENSIPUP00000022705	55.7823	42.8571
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	58.1081	43.9189	electrophorus_electricus	ENSEEEP00000016677	59.7222	45.1389
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	86.4865	85.1351	oncorhynchus_kisutch	ENSOKIP00005005582	75.2941	74.1176
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	87.8378	87.1622	oncorhynchus_kisutch	ENSOKIP00005020946	90.2778	89.5833
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	86.4865	79.0541	esox_lucius	ENSELUP00000000369	87.6712	80.137
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	87.8378	85.8108	oncorhynchus_mykiss	ENSOMYP00000024113	76.4706	74.7059
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	88.5135	87.1622	salmo_salar	ENSSSAP00000027206	97.037	95.5556
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	87.8378	85.8108	salmo_trutta	ENSSTUP00000095011	96.2963	94.0741
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	85.1351	84.4595	salmo_trutta	ENSSTUP00000099184	87.5	86.8056
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	62.8378	54.0541	gadus_morhua	ENSGMOP00000003111	64.5833	55.5556
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	52.027	fundulus_heteroclitus	ENSFHEP00000032296	67.5862	53.1034
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	57.4324	47.973	poecilia_reticulata	ENSPREP00000017834	64.3939	53.7879
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	65.5405	51.3514	oryzias_latipes	ENSORLP00000016925	57.0588	44.7059
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	60.1351	cyclopterus_lumpus	ENSCLMP00005027382	69.9301	62.2378
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	54.7297	haplochromis_burtoni	ENSHBUP00000014136	69.4444	56.25
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	69.5946	60.1351	sparus_aurata	ENSSAUP00010012731	71.0345	61.3793
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	69.5946	59.4595	lates_calcarifer	ENSLCAP00010013384	71.0345	60.6897
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	54.7297	astatotilapia_calliptera	ENSACLP00000039835	69.4444	56.25
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	54.7297	40.5405	xenopus_tropicalis	ENSXETP00000062680	54.7297	40.5405
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	56.7568	45.9459	meleagris_gallopavo	ENSMGAP00000011853	63.6364	51.5152
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	54.0541	41.2162	ornithorhynchus_anatinus	ENSOANP00000049592	52.9801	40.3974
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	60.8108	46.6216	anolis_carolinensis	ENSACAP00000012350	61.6438	47.2603
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	68.2432	56.7568	cyprinodon_variegatus	ENSCVAP00000001619	69.6552	57.931
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	54.0541	oryzias_melastigma	ENSOMEP00000009500	67.5862	55.1724
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	55.4054	takifugu_rubripes	ENSTRUP00000056347	67.5862	56.5517
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	54.0541	neolamprologus_brichardi	ENSNBRP00000004152	68.0556	55.5556
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	56.0811	kryptolebias_marmoratus	ENSKMAP00000018358	69.9301	58.042
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	71.6216	60.8108	seriola_dumerili	ENSSDUP00000008110	73.1034	62.069
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	62.8378	45.2703	pygocentrus_nattereri	ENSPNAP00000014798	64.1379	46.2069
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	55.4054	poecilia_latipinna	ENSPLAP00000000435	67.5862	56.5517
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	65.5405	55.4054	poecilia_formosa	ENSPFOP00000016595	65.9864	55.7823
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	61.4865	53.3784	scophthalmus_maximus	ENSSMAP00000000403	60.2649	52.3179
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	54.7297	45.2703	cottoperca_gobio	ENSCGOP00000022848	66.9421	55.3719
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	69.5946	59.4595	labrus_bergylta	ENSLBEP00000038398	70.068	59.8639
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	58.7838	42.5676	salvator_merianae	ENSSMRP00000014221	60	43.4483
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	70.9459	56.0811	hippocampus_comes	ENSHCOP00000011273	72.9167	57.6389
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	52.027	45.9459	gasterosteus_aculeatus	ENSGACP00000024868	79.3814	70.1031
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	58.7838	45.9459	coturnix_japonica	ENSCJPP00005005114	59.589	46.5753
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	69.5946	59.4595	amphiprion_ocellaris	ENSAOCP00000007777	72.028	61.5385
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	70.2703	59.4595	anabas_testudineus	ENSATEP00000053347	71.7241	60.6897
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	57.4324	mastacembelus_armatus	ENSMAMP00000014330	71.9424	61.1511
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	68.9189	57.4324	denticeps_clupeoides	ENSDCDP00000051145	61.8182	51.5152
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	68.2432	57.4324	betta_splendens	ENSBSLP00000026176	62.3457	52.4691
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	71.6216	61.4865	seriola_lalandi_dorsalis	ENSSLDP00000012760	73.1034	62.7586
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	71.6216	62.1622	myripristis_murdjan	ENSMMDP00005009010	72.1088	62.585
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	59.4595	sander_lucioperca	ENSSLUP00000026108	68.9655	60.6897
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	87.1622	85.8108	oncorhynchus_tshawytscha	ENSOTSP00005102420	75.8824	74.7059
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	87.8378	86.4865	oncorhynchus_tshawytscha	ENSOTSP00005024528	92.8571	91.4286
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	68.9189	58.1081	larimichthys_crocea	ENSLCRP00005058638	70.3448	59.3103
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	63.5135	54.7297	paramormyrops_kingsleyae	ENSPKIP00000010939	64.3836	55.4795
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	64.8649	49.3243	cynoglossus_semilaevis	ENSCSEP00000015657	68.0851	51.773
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	54.7297	pundamilia_nyererei	ENSPNYP00000012619	69.4444	56.25
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	58.7838	54.0541	nothobranchius_furzeri	ENSNFUP00015009577	66.9231	61.5385
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	52.027	oryzias_sinensis	ENSOSIP00000042406	68.0556	53.4722
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	54.7297	maylandia_zebra	ENSMZEP00005011382	66.6667	54
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	61.4865	48.6486	sinocyclocheilus_grahami	ENSSGRP00000111496	66.4234	52.5547
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	67.5676	56.7568	acanthochromis_polyacanthus	ENSAPOP00000008560	69.4444	58.3333
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	68.9189	59.4595	amphiprion_percula	ENSAPEP00000027492	71.3287	61.5385
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	66.2162	53.3784	cyprinus_carpio_carpio	ENSCCRP00000075668	65.7718	53.0201
ENSHHUG00000002439	hucho_hucho	ENSHHUP00000003996	52.027	43.2432	oryzias_javanicus	ENSOJAP00000046964	70	58.1818

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression