RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSHHUG00000002309	Gene ID		Accession	-
Symbol		Alias	-	Full Name	small nuclear ribonucleoprotein D2 polypeptide
Status	Confidence	Length	9246 bases	Strand	Minus strand
Position	QNTS01000182.1 : 142727 - 151972	RNA binding domain	LSM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSHHUP00000003814	LSM	PF01423	2.1e-18	1
ENSHHUP00000003824	LSM	PF01423	2.1e-18	1
ENSHHUP00000003805	LSM	PF01423	2.7e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
snrpd2-201	ENSHHUT00000003934	641	130aa	ENSHHUP00000003805
snrpd2-202	ENSHHUT00000003942	1201	118aa	ENSHHUP00000003814
snrpd2-203	ENSHHUT00000003952	605	118aa	ENSHHUP00000003824

Gene Model

Click here to download ENSHHUG00000002309's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSHHUG00000002309's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000011445	98.3051	98.3051	hucho_hucho	ENSHHUP00000003805	89.2308	89.2308
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000058134	51.3333	44	hucho_hucho	ENSHHUP00000003805	59.2308	50.7692

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	79.2308	70	caenorhabditis_elegans	C52E4.3.1	87.2881	77.1186
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	86.1538	78.4615	drosophila_melanogaster	FBpp0081234	94.1176	85.7143
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	80	70	ciona_intestinalis	ENSCINP00000033836	88.1356	77.1186
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	86.9231	83.8462	eptatretus_burgeri	ENSEBUP00000002850	94.958	91.5966
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	83.0769	82.3077	latimeria_chalumnae	ENSLACP00000005311	100	99.0741
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	lepisosteus_oculatus	ENSLOCP00000018254	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	clupea_harengus	ENSCHAP00000007221	94.3548	93.5484
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	danio_rerio	ENSDARP00000059193	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	astyanax_mexicanus	ENSAMXP00000052377	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	carassius_auratus	ENSCARP00000038325	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	carassius_auratus	ENSCARP00000131249	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	electrophorus_electricus	ENSEEEP00000031750	98.3193	97.479
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	90	oncorhynchus_kisutch	ENSOKIP00005082326	96.6942	96.6942
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	91.5385	88.4615	esox_lucius	ENSELUP00000040021	66.8539	64.6067
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90.7692	90	oncorhynchus_mykiss	ENSOMYP00000130143	84.2857	83.5714
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	93.0769	92.3077	salmo_salar	ENSSSAP00000164668	96.0317	95.2381
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	90	salmo_trutta	ENSSTUP00000103579	98.3193	98.3193
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	89.2308	salmo_trutta	ENSSTUP00000070659	95.8678	95.8678
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	gadus_morhua	ENSGMOP00000068894	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	fundulus_heteroclitus	ENSFHEP00000014060	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	xiphophorus_maculatus	ENSXMAP00000001004	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	86.9231	85.3846	poecilia_reticulata	ENSPREP00000005996	98.2609	96.5217
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	oryzias_latipes	ENSORLP00000043777	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	88.4615	85.3846	cyclopterus_lumpus	ENSCLMP00005025874	94.2623	90.9836
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	oreochromis_niloticus	ENSONIP00000054582	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	haplochromis_burtoni	ENSHBUP00000023357	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	88.4615	sparus_aurata	ENSSAUP00010020226	78	76.6667
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	lates_calcarifer	ENSLCAP00010056971	95.9016	95.082
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	astatotilapia_calliptera	ENSACLP00000002556	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	70	66.1538	callithrix_jacchus	ENSCJAP00000079866	72.2222	68.254
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	dicentrarchus_labrax	ENSDLAP00005024912	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	erpetoichthys_calabaricus	ENSECRP00000000077	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	88.4615	cyprinodon_variegatus	ENSCVAP00000008404	96.6942	95.0413
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	cyprinodon_variegatus	ENSCVAP00000028040	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	oryzias_melastigma	ENSOMEP00000029183	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	86.9231	takifugu_rubripes	ENSTRUP00000071624	95.082	92.6229
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	neolamprologus_brichardi	ENSNBRP00000000926	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	kryptolebias_marmoratus	ENSKMAP00000001972	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	40.7692	40.7692	aotus_nancymaae	ENSANAP00000027543	98.1481	98.1481
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	40.7692	40.7692	aotus_nancymaae	ENSANAP00000003585	98.1481	98.1481
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	40.7692	40.7692	aotus_nancymaae	ENSANAP00000000673	98.1481	98.1481
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	seriola_dumerili	ENSSDUP00000007514	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	pygocentrus_nattereri	ENSPNAP00000019039	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	poecilia_latipinna	ENSPLAP00000008218	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	poecilia_formosa	ENSPFOP00000016865	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	76.9231	69.2308	ciona_savignyi	ENSCSAVP00000005907	81.3008	73.1707
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	scophthalmus_maximus	ENSSMAP00000036175	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	cottoperca_gobio	ENSCGOP00000033977	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	40.7692	40.7692	taeniopygia_guttata	ENSTGUP00000019555	98.1481	98.1481
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	labrus_bergylta	ENSLBEP00000025449	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	83.0769	82.3077	amphilophus_citrinellus	ENSACIP00000029292	100	99.0741
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	hippocampus_comes	ENSHCOP00000022899	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	87.6923	gasterosteus_aculeatus	ENSGACP00000008864	99.1525	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	amphiprion_ocellaris	ENSAOCP00000019174	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	anabas_testudineus	ENSATEP00000001358	96.6667	95.8333
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	mastacembelus_armatus	ENSMAMP00000048659	95.082	94.2623
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	44.6154	41.5385	moschus_moschiferus	ENSMMSP00000030910	67.4419	62.7907
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	41.5385	40.7692	cebus_imitator	ENSCCAP00000001130	100	98.1481
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	90	denticeps_clupeoides	ENSDCDP00000017197	98.3193	98.3193
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	88.4615	87.6923	betta_splendens	ENSBSLP00000007441	95.0413	94.2149
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	seriola_lalandi_dorsalis	ENSSLDP00000011793	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	myripristis_murdjan	ENSMMDP00005012724	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	33.8462	33.8462	propithecus_coquereli	ENSPCOP00000008709	93.617	93.617
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	sander_lucioperca	ENSSLUP00000029572	98.3051	96.6102
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	64.6154	44.6154	saccharomyces_cerevisiae	YLR275W	76.3636	52.7273
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90.7692	90	oncorhynchus_tshawytscha	ENSOTSP00005011731	95.935	95.1219
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	88.4615	paramormyrops_kingsleyae	ENSPKIP00000013818	99.1525	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	pundamilia_nyererei	ENSPNYP00000015609	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	nothobranchius_furzeri	ENSNFUP00015041080	89.9225	89.1473
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	maylandia_zebra	ENSMZEP00005017365	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	72.3077	68.4615	sinocyclocheilus_grahami	ENSSGRP00000087163	81.0345	76.7241
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	acanthochromis_polyacanthus	ENSAPOP00000027637	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	amphiprion_percula	ENSAPEP00000030538	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	88.4615	stegastes_partitus	ENSSPAP00000020908	98.3051	97.4576
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	90	89.2308	cyprinus_carpio_carpio	ENSCCRP00000106002	99.1525	98.3051
ENSHHUG00000002309	hucho_hucho	ENSHHUP00000003805	89.2308	87.6923	oryzias_javanicus	ENSOJAP00000020081	95.082	93.4426

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression