| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSHCOG00000008904 | Gene ID |
109518338 |
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
serrate RNA effector molecule homolog |
| Status |
Confidence |
Length |
6143 bases |
Strand |
Plus strand |
| Position |
KV879710.1 : 140231 - 146373 |
RNA binding domain |
ARS2 , SERRATE_Ars2_N |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSHCOP00000007017 |
ARS2 |
PF04959 |
1.4e-77 |
1 |
| ENSHCOP00000007017 |
SERRATE_Ars2_N |
PF12066 |
6.8e-36 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ENSHCOT00000002707 |
3284 |
790aa |
ENSHCOP00000007017 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000019813 | 67.4338 | 55.1208 | hippocampus_comes | ENSHCOP00000007017 | 74.1772 | 60.6329 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 45.6962 | 40.5063 | fundulus_heteroclitus | ENSFHEP00000023228 | 77.1367 | 68.3761 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 16.4557 | 13.2911 | poecilia_reticulata | ENSPREP00000020943 | 65.3266 | 52.7638 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 84.1772 | 74.9367 | xiphophorus_maculatus | ENSXMAP00000002094 | 81.0976 | 72.1951 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 46.7089 | 41.7722 | cyclopterus_lumpus | ENSCLMP00005033485 | 77.8481 | 69.6203 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 88.9873 | 80.5063 | oreochromis_niloticus | ENSONIP00000020257 | 80.8976 | 73.1876 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 18.3544 | 16.2025 | haplochromis_burtoni | ENSHBUP00000018894 | 73.2323 | 64.6465 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 84.1772 | 75.9494 | sparus_aurata | ENSSAUP00010023426 | 76.7013 | 69.2042 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 88.6076 | 79.7468 | astatotilapia_calliptera | ENSACLP00000013782 | 80.4598 | 72.4138 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 89.6203 | 82.0253 | lates_calcarifer | ENSLCAP00010054619 | 74.5263 | 68.2105 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 17.4684 | 15.5696 | lates_calcarifer | ENSLCAP00010019817 | 79.7688 | 71.0983 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 83.038 | 75.0633 | cyprinodon_variegatus | ENSCVAP00000029517 | 81.7955 | 73.9401 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 89.3671 | 81.519 | dicentrarchus_labrax | ENSDLAP00005075365 | 71.6751 | 65.3807 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 85.3165 | 77.9747 | oryzias_melastigma | ENSOMEP00000005923 | 80.622 | 73.6842 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 86.5823 | 78.1013 | kryptolebias_marmoratus | ENSKMAP00000011266 | 78.8018 | 71.0829 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 84.0506 | 74.9367 | poecilia_formosa | ENSPFOP00000016651 | 81.3726 | 72.549 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 71.3924 | 65.0633 | scophthalmus_maximus | ENSSMAP00000029708 | 81.7391 | 74.4928 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 43.038 | 38.8608 | seriola_dumerili | ENSSDUP00000002660 | 74.7253 | 67.4725 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 83.924 | 74.9367 | poecilia_latipinna | ENSPLAP00000021075 | 81.6502 | 72.9064 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 20.8861 | 18.1013 | amphilophus_citrinellus | ENSACIP00000011142 | 81.6832 | 70.7921 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 59.3671 | 52.4051 | labrus_bergylta | ENSLBEP00000038807 | 73.1669 | 64.5866 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 48.2278 | 42.5316 | anabas_testudineus | ENSATEP00000052706 | 69.5256 | 61.3139 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 21.1392 | 18.7342 | acanthochromis_polyacanthus | ENSAPOP00000025508 | 86.5285 | 76.6839 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 84.0506 | 76.3291 | gasterosteus_aculeatus | ENSGACP00000001428 | 76.1468 | 69.1514 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 34.1772 | 30.7595 | tetraodon_nigroviridis | ENSTNIP00000000412 | 80.8383 | 72.7545 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 85.443 | 74.6835 | tetraodon_nigroviridis | ENSTNIP00000000912 | 77.4971 | 67.7382 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 88.7342 | 79.8734 | maylandia_zebra | ENSMZEP00005037547 | 80.5747 | 72.5287 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 89.3671 | 81.2658 | amphiprion_ocellaris | ENSAOCP00000023239 | 81.9025 | 74.478 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 69.1139 | 63.2911 | mastacembelus_armatus | ENSMAMP00000015728 | 79.5918 | 72.8863 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 19.8734 | 17.8481 | pundamilia_nyererei | ENSPNYP00000013781 | 86.2637 | 77.4725 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 84.6835 | 76.8354 | cynoglossus_semilaevis | ENSCSEP00000008177 | 81.685 | 74.1148 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 25.443 | 20.6329 | oryzias_javanicus | ENSOJAP00000033893 | 59.8214 | 48.5119 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 22.5316 | 20.8861 | oryzias_javanicus | ENSOJAP00000033881 | 81.6514 | 75.6881 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 86.962 | 78.8608 | betta_splendens | ENSBSLP00000002166 | 79.5139 | 72.1065 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 60.6329 | 54.0506 | larimichthys_crocea | ENSLCRP00005038410 | 67.9433 | 60.5674 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 63.1646 | 57.2152 | nothobranchius_furzeri | ENSNFUP00015024318 | 78.4591 | 71.0692 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 89.3671 | 81.2658 | amphiprion_percula | ENSAPEP00000028214 | 81.9025 | 74.478 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 15.0633 | 13.4177 | seriola_lalandi_dorsalis | ENSSLDP00000024205 | 76.7742 | 68.3871 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 19.8734 | 17.7215 | neolamprologus_brichardi | ENSNBRP00000031465 | 86.2637 | 76.9231 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 71.8987 | 65.0633 | sander_lucioperca | ENSSLUP00000009866 | 70.8229 | 64.0898 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 83.038 | 75.8228 | stegastes_partitus | ENSSPAP00000025082 | 81.1881 | 74.1337 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 47.2152 | 34.1772 | caenorhabditis_elegans | E01A2.2a.1 | 52.3876 | 37.9213 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 58.3544 | 43.7975 | drosophila_melanogaster | FBpp0085356 | 48.8865 | 36.6914 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 57.9747 | 43.038 | ciona_intestinalis | ENSCINP00000007200 | 53.4422 | 39.6733 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 69.4937 | 54.6835 | petromyzon_marinus | ENSPMAP00000010575 | 65.0474 | 51.1848 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 51.7722 | 40.2532 | eptatretus_burgeri | ENSEBUP00000013517 | 60.5926 | 47.1111 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 80.8861 | 69.6203 | esox_lucius | ENSELUP00000040668 | 72.2851 | 62.2172 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 83.5443 | 74.4304 | gadus_morhua | ENSGMOP00000036827 | 78.6651 | 70.0834 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 57.7215 | 42.7848 | ciona_savignyi | ENSCSAVP00000014334 | 50.5543 | 37.4723 |
| ENSHCOG00000008904 | hippocampus_comes | ENSHCOP00000007017 | 65.8228 | 59.6203 | myripristis_murdjan | ENSMMDP00005041555 | 75.9124 | 68.7591 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
