RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSHBUG00000020986	Gene ID	102305720	Accession	-
Symbol	tars3	Alias	-	Full Name	threonyl-tRNA synthetase 3
Status	Confidence	Length	13213 bases	Strand	Minus strand
Position	JH425324.1 : 3954141 - 3967353	RNA binding domain	HGTP_anticodon , tRNA_SAD , tRNA-synt_2b
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSHBUP00000018833	HGTP_anticodon	PF03129	1.7e-19	1
ENSHBUP00000018833	tRNA_SAD	PF07973	5.5e-11	2
ENSHBUP00000018833	tRNA-synt_2b	PF00587	6.4e-35	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSHBUT00000035247	3228	814aa	ENSHBUP00000018833

Gene Model

Click here to download ENSHBUG00000020986's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSHBUG00000020986's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000029325	38.3023	21.3251	haplochromis_burtoni	ENSHBUP00000018833	22.7273	12.6536
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000002186	68.4438	52.8818	haplochromis_burtoni	ENSHBUP00000018833	58.3538	45.086
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000025619	42.3881	22.6866	haplochromis_burtoni	ENSHBUP00000018833	17.4447	9.33661
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000027822	88.6427	77.1468	haplochromis_burtoni	ENSHBUP00000018833	78.6241	68.4275

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.9803	89.9263	xiphophorus_maculatus	ENSXMAP00000016731	93.9803	89.9263
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.7862	85.5037	fundulus_heteroclitus	ENSFHEP00000009164	71.6085	67.4419
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	89.5577	85.3808	poecilia_reticulata	ENSPREP00000011963	93.5815	89.2169
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	92.2604	86.4865	oryzias_latipes	ENSORLP00000017952	92.4877	86.6995
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	97.0516	95.5774	oreochromis_niloticus	ENSONIP00000077600	95.1807	93.7349
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	65.1106	61.3022	cyclopterus_lumpus	ENSCLMP00005001344	95.6679	90.0722
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	99.2629	98.7715	astatotilapia_calliptera	ENSACLP00000027394	99.2629	98.7715
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	92.9975	87.715	oryzias_melastigma	ENSOMEP00000015536	93.3416	88.0395
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.8575	89.5577	poecilia_latipinna	ENSPLAP00000008551	93.8575	89.5577
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	21.3759	18.3047	tetraodon_nigroviridis	ENSTNIP00000004523	90.1554	77.2021
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	86.855	78.0098	tetraodon_nigroviridis	ENSTNIP00000014887	88.375	79.375
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.6118	88.2064	kryptolebias_marmoratus	ENSKMAP00000002310	93.3824	87.9902
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.2432	87.9607	oryzias_javanicus	ENSOJAP00000010930	93.5882	88.2861
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.8575	87.2236	nothobranchius_furzeri	ENSNFUP00015049182	93.9729	87.3309
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.9459	92.3833	dicentrarchus_labrax	ENSDLAP00005057382	91.1319	87.748
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	94.1032	89.8034	mastacembelus_armatus	ENSMAMP00000007787	93.3008	89.0378
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.2088	91.0319	stegastes_partitus	ENSSPAP00000027138	95.561	91.3687
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	96.3145	93.2432	lates_calcarifer	ENSLCAP00010059044	96.433	93.3579
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.7002	92.1376	seriola_lalandi_dorsalis	ENSSLDP00000021232	95.818	92.2509
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	82.3096	75.7985	hippocampus_comes	ENSHCOP00000017521	93.185	85.8136
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.3317	91.6462	amphiprion_percula	ENSAPEP00000011213	95.449	91.7589
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.5774	92.2604	seriola_dumerili	ENSSDUP00000010245	95.695	92.3739
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.8575	89.5577	poecilia_formosa	ENSPFOP00000014158	93.7423	89.4479
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	76.1671	73.7101	labrus_bergylta	ENSLBEP00000023801	97.6378	94.4882
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.9803	89.5577	labrus_bergylta	ENSLBEP00000024260	93.6353	89.2289
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	83.2924	78.5012	gasterosteus_aculeatus	ENSGACP00000019326	93.3884	88.0165
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.6118	88.8206	cynoglossus_semilaevis	ENSCSEP00000017371	93.7269	88.9299
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	92.8747	89.0663	sander_lucioperca	ENSSLUP00000033593	94.9749	91.0804
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	99.2629	98.8943	maylandia_zebra	ENSMZEP00005007500	99.2629	98.8943
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	84.6437	83.1695	amphilophus_citrinellus	ENSACIP00000006646	98.2882	96.5763
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	57.7396	57.2482	neolamprologus_brichardi	ENSNBRP00000010352	97.9167	97.0833
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.5774	92.2604	larimichthys_crocea	ENSLCRP00005026868	95.3431	92.0343
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.3661	88.8206	cyprinodon_variegatus	ENSCVAP00000025076	94.6451	90.0374
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.7002	91.8919	amphiprion_ocellaris	ENSAOCP00000023269	95.818	92.0049
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	94.7174	90.6634	anabas_testudineus	ENSATEP00000005783	95.0678	90.9988
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	89.9263	80.4668	takifugu_rubripes	ENSTRUP00000007981	90.9317	81.3665
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	68.6732	67.0762	acanthochromis_polyacanthus	ENSAPOP00000018376	99.1135	96.8085
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	88.6978	82.3096	oryzias_sinensis	ENSOSIP00000049074	87.0929	80.8203
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	79.484	78.9926	pundamilia_nyererei	ENSPNYP00000012924	99.0812	98.4686
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	92.629	86.855	betta_splendens	ENSBSLP00000032264	93.2015	87.3918
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	13.145	12.1622	cottoperca_gobio	ENSCGOP00000032885	78.6765	72.7941
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	95.086	90.5405	sparus_aurata	ENSSAUP00010056034	95.2029	90.6519
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.5405	86.7322	scophthalmus_maximus	ENSSMAP00000047848	93.5279	89.5939
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	64.2506	55.2826	ciona_intestinalis	ENSCINP00000008908	83.1479	71.5421
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	80.4668	68.7961	petromyzon_marinus	ENSPMAP00000005505	80.2696	68.6274
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	77.6413	67.5676	eptatretus_burgeri	ENSEBUP00000017573	81.6537	71.0594
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	82.0639	72.3587	latimeria_chalumnae	ENSLACP00000021270	85.2041	75.1275
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	67.9361	59.4595	lepisosteus_oculatus	ENSLOCP00000017977	70.9884	62.1309
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	89.9263	82.9238	clupea_harengus	ENSCHAP00000016446	89.5961	82.6193
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	50.86	47.1744	danio_rerio	ENSDARP00000138354	95.612	88.6836
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	80.344	72.3587	carassius_auratus	ENSCARP00000057394	84.715	76.2953
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.172	82.1867	ictalurus_punctatus	ENSIPUP00000015009	89.2944	81.3869
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	88.6978	79.484	electrophorus_electricus	ENSEEEP00000006889	87.0929	78.0458
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	89.6806	82.6781	astyanax_mexicanus	ENSAMXP00000021476	85.2804	78.6215
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	89.4349	83.7838	esox_lucius	ENSELUP00000030269	89.2157	83.5784
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.4005	85.0123	oncorhynchus_kisutch	ENSOKIP00005035456	90.0726	83.7772
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.7862	84.7666	oncorhynchus_kisutch	ENSOKIP00005054611	89.3591	83.4341
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.0319	84.8894	oncorhynchus_mykiss	ENSOMYP00000069416	89.601	83.555
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.8919	85.258	oncorhynchus_mykiss	ENSOMYP00000098148	90.1205	83.6145
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	86.9779	80.7125	salmo_salar	ENSSSAP00000093598	89.507	83.0594
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.6462	85.1351	salmo_salar	ENSSSAP00000099040	89.7714	83.3935
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.6462	85.1351	salmo_trutta	ENSSTUP00000032626	83.8202	77.8652
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	86.1179	80.2211	salmo_trutta	ENSSTUP00000062044	90.4516	84.2581
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.7862	83.5381	gadus_morhua	ENSGMOP00000060370	90.5637	83.3333
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	67.199	54.5455	chrysemys_picta_bellii	ENSCPBP00000010762	76.8258	62.3596
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	28.5012	23.7101	sphenodon_punctatus	ENSSPUP00000001945	70.303	58.4848
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	41.2776	35.1351	erpetoichthys_calabaricus	ENSECRP00000033134	85.4962	72.7735
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	66.8305	54.0541	chelonoidis_abingdonii	ENSCABP00000014521	71.2042	57.5916
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	65.3563	52.5799	pelodiscus_sinensis	ENSPSIP00000017599	81.2214	65.3435
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.6634	84.0295	pygocentrus_nattereri	ENSPNAP00000009846	89.3462	82.8087
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	82.1867	71.0074	xenopus_tropicalis	ENSXETP00000043847	82.1867	71.0074
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	79.484	67.199	notechis_scutatus	ENSNSUP00000026521	81.0777	68.5464
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	66.7076	54.0541	gopherus_evgoodei	ENSGEVP00005020659	77.4608	62.7675
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	81.2039	70.0246	leptobrachium_leishanense	ENSLLEP00000007829	81.5043	70.2836
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	82.9238	75.7985	denticeps_clupeoides	ENSDCDP00000055418	93.361	85.3389
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	89.1892	81.4496	denticeps_clupeoides	ENSDCDP00000057454	90.6367	82.7715
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	79.7297	67.5676	naja_naja	ENSNNAP00000007895	83.3119	70.6033
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	85.1351	76.9042	sinocyclocheilus_grahami	ENSSGRP00000045222	88.8462	80.2564
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	69.2875	55.774	terrapene_carolina_triunguis	ENSTMTP00000008708	69.7157	56.1187
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	93.1204	88.2064	myripristis_murdjan	ENSMMDP00005043456	93.2349	88.3149
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	88.8206	79.1155	paramormyrops_kingsleyae	ENSPKIP00000001925	89.5911	79.8017
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.5233	85.1351	hucho_hucho	ENSHHUP00000047205	89.3285	83.0935
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.9091	84.8894	hucho_hucho	ENSHHUP00000011192	88.3055	82.4582
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	87.8378	79.3612	cyprinus_carpio_carpio	ENSCCRP00000116822	89.4869	80.8511
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	88.3292	80.0983	cyprinus_carpio_carpio	ENSCCRP00000085847	88.0049	79.8042
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	88.4521	80.0983	scleropages_formosus	ENSSFOP00015026586	82.9493	75.1152
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	90.7862	84.6437	oncorhynchus_tshawytscha	ENSOTSP00005029322	89.3591	83.3132
ENSHBUG00000020986	haplochromis_burtoni	ENSHBUP00000018833	91.6462	85.0123	oncorhynchus_tshawytscha	ENSOTSP00005027687	90.2056	83.6759

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression