| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSGACG00000003454 | Gene ID |
|
Accession |
- |
| Symbol |
u2af1 |
Alias |
- |
Full Name |
U2 small nuclear RNA auxiliary factor 1 |
| Status |
Confidence |
Length |
3643 bases |
Strand |
Plus strand |
| Position |
groupXVI : 7744661 - 7748303 |
RNA binding domain |
zf-CCCH , RRM_1 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSGACP00000004520 |
zf-CCCH |
PF00642 |
6.8e-14 |
1 |
| ENSGACP00000004520 |
zf-CCCH |
PF00642 |
6.8e-14 |
2 |
| ENSGACP00000004520 |
RRM_1 |
PF00076 |
2.4e-06 |
3 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| u2af1-201 |
ENSGACT00000004534 |
720 |
239aa |
ENSGACP00000004520 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000019289 | 94.2982 | 90.7895 | gasterosteus_aculeatus | ENSGACP00000004520 | 89.9582 | 86.6109 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000019877 | 22.2997 | 15.6794 | gasterosteus_aculeatus | ENSGACP00000004520 | 53.5565 | 37.6569 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.1423 | 92.887 | fundulus_heteroclitus | ENSFHEP00000015966 | 96.5665 | 95.279 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.9791 | 93.7238 | poecilia_reticulata | ENSPREP00000033475 | 96.5957 | 95.3191 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.1423 | 93.3054 | oreochromis_niloticus | ENSONIP00000017989 | 94.5378 | 93.6975 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 95.3975 | 94.1423 | xiphophorus_maculatus | ENSXMAP00000031955 | 94.6058 | 93.361 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.1423 | 93.3054 | astatotilapia_calliptera | ENSACLP00000005244 | 94.5378 | 93.6975 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 92.887 | 91.6318 | cyprinodon_variegatus | ENSCVAP00000024231 | 97.7974 | 96.4758 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 92.887 | 90.3766 | takifugu_rubripes | ENSTRUP00000026600 | 96.1039 | 93.5065 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.1423 | 93.3054 | neolamprologus_brichardi | ENSNBRP00000007876 | 94.5378 | 93.6975 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 67.7824 | 66.1088 | oryzias_melastigma | ENSOMEP00000017845 | 94.7368 | 92.3977 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 95.8159 | 95.8159 | seriola_dumerili | ENSSDUP00000007265 | 98.7069 | 98.7069 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 93.3054 | 92.0502 | poecilia_formosa | ENSPFOP00000013858 | 96.9565 | 95.6522 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 93.3054 | 92.0502 | poecilia_latipinna | ENSPLAP00000025442 | 96.9565 | 95.6522 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 98.7448 | 98.7448 | cottoperca_gobio | ENSCGOP00000044387 | 93.2806 | 93.2806 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.6527 | 96.6527 | labrus_bergylta | ENSLBEP00000017569 | 98.7179 | 98.7179 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.2343 | 96.2343 | anabas_testudineus | ENSATEP00000015598 | 99.1379 | 99.1379 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.2343 | 95.8159 | stegastes_partitus | ENSSPAP00000007471 | 98.2906 | 97.8633 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 95.8159 | 95.3975 | amphiprion_ocellaris | ENSAOCP00000027210 | 98.7069 | 98.2759 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 95.8159 | 95.8159 | seriola_lalandi_dorsalis | ENSSLDP00000025016 | 98.7069 | 98.7069 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 93.3054 | 89.9582 | tetraodon_nigroviridis | ENSTNIP00000016919 | 96.5368 | 93.0736 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 92.887 | 92.0502 | nothobranchius_furzeri | ENSNFUP00015012521 | 96.1039 | 95.2381 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.6527 | 96.6527 | scophthalmus_maximus | ENSSMAP00000031042 | 98.2979 | 98.2979 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 90.3766 | 89.9582 | hippocampus_comes | ENSHCOP00000010898 | 97.2973 | 96.8468 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 89.5397 | 85.7741 | oryzias_javanicus | ENSOJAP00000034895 | 93.0435 | 89.1304 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.2343 | 95.8159 | acanthochromis_polyacanthus | ENSAPOP00000021612 | 98.2906 | 97.8633 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.1423 | 93.3054 | pundamilia_nyererei | ENSPNYP00000025370 | 94.5378 | 93.6975 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 95.8159 | 95.3975 | amphiprion_percula | ENSAPEP00000001724 | 98.7069 | 98.2759 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 98.7448 | 98.7448 | sander_lucioperca | ENSSLUP00000046446 | 97.9253 | 97.9253 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 97.908 | 97.908 | mastacembelus_armatus | ENSMAMP00000023124 | 98.3193 | 98.3193 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 76.569 | 66.1088 | caenorhabditis_elegans | Y116A8C.35a.2 | 64.2105 | 55.4386 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 83.2636 | 75.7322 | drosophila_melanogaster | FBpp0305600 | 75.3788 | 68.5606 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 76.569 | 71.5481 | ciona_intestinalis | ENSCINP00000008425 | 83.945 | 78.4404 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 73.2218 | 69.8745 | eptatretus_burgeri | ENSEBUP00000003662 | 87.0647 | 83.0846 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 85.7741 | 79.4979 | eptatretus_burgeri | ENSEBUP00000020473 | 72.1831 | 66.9014 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 97.0711 | 95.3975 | clupea_harengus | ENSCHAP00000000197 | 79.1809 | 77.8157 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.2343 | 94.1423 | danio_rerio | ENSDARP00000005582 | 92 | 90 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 89.5397 | 87.0293 | carassius_auratus | ENSCARP00000063130 | 93.8596 | 91.2281 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 95.3975 | 92.887 | astyanax_mexicanus | ENSAMXP00000052332 | 96.2025 | 93.6709 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.6527 | 94.9791 | erpetoichthys_calabaricus | ENSECRP00000005214 | 91.6667 | 90.0794 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 76.569 | 70.7113 | ciona_savignyi | ENSCSAVP00000000588 | 86.3208 | 79.717 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.2343 | 92.0502 | myotis_lucifugus | ENSMLUP00000013426 | 96.6387 | 92.437 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.9791 | 93.3054 | hucho_hucho | ENSHHUP00000090842 | 95.7806 | 94.0928 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 93.3054 | 90.795 | hucho_hucho | ENSHHUP00000008953 | 95.2991 | 92.735 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 96.2343 | 92.0502 | hucho_hucho | ENSHHUP00000084191 | 94.2623 | 90.1639 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.9791 | 92.0502 | denticeps_clupeoides | ENSDCDP00000012064 | 73.9414 | 71.6612 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 88.7029 | 84.9372 | denticeps_clupeoides | ENSDCDP00000033130 | 94.6429 | 90.625 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 94.9791 | 94.1423 | myripristis_murdjan | ENSMMDP00005019880 | 89.0196 | 88.2353 |
| ENSGACG00000003454 | gasterosteus_aculeatus | ENSGACP00000004520 | 76.1506 | 75.3138 | cyprinus_carpio_carpio | ENSCCRP00000067969 | 96.2963 | 95.2381 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
