| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSGACG00000000821 | Gene ID |
|
Accession |
- |
| Symbol |
rbm4.2 |
Alias |
- |
Full Name |
RNA binding motif protein 4.2 |
| Status |
Confidence |
Length |
4277 bases |
Strand |
Plus strand |
| Position |
scaffold_47 : 827304 - 831580 |
RNA binding domain |
RRM_5 , RRM_1 , zf-CCHC |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSGACP00000001061 |
RRM_5 |
PF13893 |
7.2e-07 |
1 |
| ENSGACP00000001061 |
RRM_1 |
PF00076 |
5.8e-29 |
2 |
| ENSGACP00000001061 |
RRM_1 |
PF00076 |
5.8e-29 |
3 |
| ENSGACP00000001061 |
zf-CCHC |
PF00098 |
3e-06 |
4 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| rbm4.2-201 |
ENSGACT00000001061 |
1800 |
378aa |
ENSGACP00000001061 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000010967 | 18.7654 | 10.3704 | gasterosteus_aculeatus | ENSGACP00000001061 | 20.1058 | 11.1111 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001871 | 25.4902 | 14.7059 | gasterosteus_aculeatus | ENSGACP00000001061 | 20.6349 | 11.9048 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000025947 | 20.3804 | 10.3261 | gasterosteus_aculeatus | ENSGACP00000001061 | 19.8413 | 10.0529 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000005484 | 16.6253 | 6.45161 | gasterosteus_aculeatus | ENSGACP00000001061 | 17.7249 | 6.87831 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000020678 | 24.4838 | 13.5693 | gasterosteus_aculeatus | ENSGACP00000001061 | 21.9577 | 12.1693 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000026825 | 36.5385 | 21.1538 | gasterosteus_aculeatus | ENSGACP00000001061 | 10.0529 | 5.82011 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000026824 | 18.9573 | 11.3744 | gasterosteus_aculeatus | ENSGACP00000001061 | 10.582 | 6.34921 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000019756 | 30.3571 | 20.2381 | gasterosteus_aculeatus | ENSGACP00000001061 | 13.4921 | 8.99471 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000020054 | 27.8947 | 17.8947 | gasterosteus_aculeatus | ENSGACP00000001061 | 14.0212 | 8.99471 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000013531 | 18.1208 | 10.0671 | gasterosteus_aculeatus | ENSGACP00000001061 | 28.5714 | 15.873 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000021715 | 30.8219 | 17.1233 | gasterosteus_aculeatus | ENSGACP00000001061 | 23.8095 | 13.2275 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000000488 | 35.1955 | 16.7598 | gasterosteus_aculeatus | ENSGACP00000001061 | 16.6667 | 7.93651 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000019717 | 24.1692 | 10.8761 | gasterosteus_aculeatus | ENSGACP00000001061 | 21.164 | 9.52381 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000012442 | 24.7423 | 12.6289 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.3968 | 12.963 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000022780 | 20.4545 | 13.6364 | gasterosteus_aculeatus | ENSGACP00000001061 | 21.4286 | 14.2857 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000021405 | 16.1983 | 8.76033 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.9259 | 14.0212 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000011453 | 25.4848 | 14.6814 | gasterosteus_aculeatus | ENSGACP00000001061 | 24.3386 | 14.0212 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000016768 | 27.7937 | 16.9054 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.6614 | 15.6085 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000023937 | 26.1494 | 14.6552 | gasterosteus_aculeatus | ENSGACP00000001061 | 24.0741 | 13.4921 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000027539 | 24.9292 | 15.0142 | gasterosteus_aculeatus | ENSGACP00000001061 | 23.2804 | 14.0212 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000012505 | 9.5082 | 4.80874 | gasterosteus_aculeatus | ENSGACP00000001061 | 23.0159 | 11.6402 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000003666 | 20 | 11.4815 | gasterosteus_aculeatus | ENSGACP00000001061 | 28.5714 | 16.4021 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000004422 | 19.4444 | 10.9259 | gasterosteus_aculeatus | ENSGACP00000001061 | 27.7778 | 15.6085 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000017578 | 28.0864 | 12.963 | gasterosteus_aculeatus | ENSGACP00000001061 | 24.0741 | 11.1111 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000020847 | 26.4781 | 14.1388 | gasterosteus_aculeatus | ENSGACP00000001061 | 27.2487 | 14.5503 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000004414 | 27.6882 | 13.9785 | gasterosteus_aculeatus | ENSGACP00000001061 | 27.2487 | 13.7566 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000011862 | 14.0556 | 6.14934 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.3968 | 11.1111 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000026394 | 48.1132 | 35.8491 | gasterosteus_aculeatus | ENSGACP00000001061 | 53.9683 | 40.2116 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000005955 | 26.8698 | 14.1274 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.6614 | 13.4921 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001067 | 57.5179 | 43.4368 | gasterosteus_aculeatus | ENSGACP00000001061 | 63.7566 | 48.1481 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.2434 | 29.8942 | fundulus_heteroclitus | ENSFHEP00000002676 | 90.1316 | 74.3421 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 73.2804 | 60.0529 | poecilia_reticulata | ENSPREP00000005456 | 73.6702 | 60.3723 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 88.3598 | 82.8042 | cyclopterus_lumpus | ENSCLMP00005050416 | 88.5942 | 83.0239 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 42.8571 | 36.7725 | oreochromis_niloticus | ENSONIP00000038958 | 70.4348 | 60.4348 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 78.836 | 65.0794 | xiphophorus_maculatus | ENSXMAP00000021248 | 78.836 | 65.0794 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.5079 | 33.0688 | haplochromis_burtoni | ENSHBUP00000010083 | 89.6104 | 81.1688 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 84.9206 | 74.6032 | astatotilapia_calliptera | ENSACLP00000011299 | 84.4737 | 74.2105 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 59.5238 | 52.381 | lates_calcarifer | ENSLCAP00010033796 | 80.0712 | 70.4626 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 80.9524 | 69.8413 | takifugu_rubripes | ENSTRUP00000033948 | 80.7388 | 69.657 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.7725 | 33.3333 | neolamprologus_brichardi | ENSNBRP00000023215 | 89.6774 | 81.2903 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 90.2116 | 82.5397 | seriola_dumerili | ENSSDUP00000005304 | 88.5714 | 81.039 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 78.836 | 65.3439 | poecilia_formosa | ENSPFOP00000012672 | 78.628 | 65.1715 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 86.2434 | 79.1005 | dicentrarchus_labrax | ENSDLAP00005045215 | 89.5604 | 82.1429 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 35.1852 | 29.1005 | poecilia_latipinna | ENSPLAP00000028855 | 84.7134 | 70.0637 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 88.6243 | 82.5397 | cottoperca_gobio | ENSCGOP00000052490 | 90.5405 | 84.3243 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 85.9788 | 78.0423 | labrus_bergylta | ENSLBEP00000025922 | 85.3018 | 77.4278 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 34.9206 | 31.746 | anabas_testudineus | ENSATEP00000002687 | 95.6522 | 86.9565 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 87.037 | 76.9841 | stegastes_partitus | ENSSPAP00000025188 | 85.9008 | 75.9791 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.7725 | 32.5397 | amphiprion_ocellaris | ENSAOCP00000007187 | 95.2055 | 84.2466 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 90.4762 | 82.5397 | seriola_lalandi_dorsalis | ENSSLDP00000016586 | 88.8312 | 81.039 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 80.1587 | 68.7831 | tetraodon_nigroviridis | ENSTNIP00000000403 | 80.1587 | 68.7831 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 78.3069 | 68.7831 | nothobranchius_furzeri | ENSNFUP00015010916 | 78.9333 | 69.3333 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 71.164 | 62.1693 | betta_splendens | ENSBSLP00000011389 | 84.326 | 73.6677 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 38.8889 | 32.8042 | hippocampus_comes | ENSHCOP00000023137 | 86.4706 | 72.9412 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.7725 | 32.0106 | acanthochromis_polyacanthus | ENSAPOP00000009997 | 95.2055 | 82.8767 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.7725 | 33.3333 | pundamilia_nyererei | ENSPNYP00000006025 | 89.6774 | 81.2903 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 82.0106 | 74.8677 | larimichthys_crocea | ENSLCRP00005017111 | 85.6354 | 78.1768 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.5079 | 32.2751 | amphiprion_percula | ENSAPEP00000013309 | 85.7143 | 75.7764 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 83.0688 | 70.6349 | cynoglossus_semilaevis | ENSCSEP00000022525 | 81.1369 | 68.9922 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 88.0952 | 82.0106 | sander_lucioperca | ENSSLUP00000014849 | 88.0952 | 82.0106 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 45.2381 | 37.5661 | maylandia_zebra | ENSMZEP00005037769 | 57 | 47.3333 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 86.5079 | 78.0423 | mastacembelus_armatus | ENSMAMP00000002485 | 85.6021 | 77.2251 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 39.1534 | 34.127 | amphilophus_citrinellus | ENSACIP00000021205 | 90.2439 | 78.6585 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 77.7778 | 63.4921 | kryptolebias_marmoratus | ENSKMAP00000008709 | 75 | 61.2245 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 36.2434 | 27.5132 | petromyzon_marinus | ENSPMAP00000003736 | 64.3193 | 48.8263 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 52.381 | 36.5079 | eptatretus_burgeri | ENSEBUP00000011167 | 55.618 | 38.764 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 53.7037 | 38.0952 | eptatretus_burgeri | ENSEBUP00000012831 | 52.8646 | 37.5 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 39.1534 | 28.3069 | latimeria_chalumnae | ENSLACP00000007148 | 51.7483 | 37.4126 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 70.8995 | 55.291 | clupea_harengus | ENSCHAP00000009188 | 66.0098 | 51.4778 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 30.6878 | 24.0741 | lepisosteus_oculatus | ENSLOCP00000003259 | 77.8523 | 61.0738 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 69.0476 | 55.291 | danio_rerio | ENSDARP00000102928 | 67.9688 | 54.4271 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 69.3122 | 56.8783 | carassius_auratus | ENSCARP00000025543 | 68.2292 | 55.9896 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 68.254 | 56.3492 | carassius_auratus | ENSCARP00000120630 | 67.3629 | 55.6136 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 30.1587 | 22.2222 | astyanax_mexicanus | ENSAMXP00000040085 | 71.6981 | 52.8302 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 67.4603 | 51.8519 | ictalurus_punctatus | ENSIPUP00000034134 | 66.9291 | 51.4436 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 66.6667 | 52.9101 | electrophorus_electricus | ENSEEEP00000011876 | 65.9686 | 52.356 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 75.9259 | 62.6984 | esox_lucius | ENSELUP00000013029 | 73.2143 | 60.4592 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 76.455 | 62.963 | oncorhynchus_mykiss | ENSOMYP00000022563 | 71.0074 | 58.4767 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 68.254 | 56.6138 | salmo_salar | ENSSSAP00000004544 | 58.6364 | 48.6364 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 83.5979 | 72.4868 | gadus_morhua | ENSGMOP00000031444 | 81.0256 | 70.2564 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 54.4974 | 40.4762 | xenopus_tropicalis | ENSXETP00000117837 | 60.9467 | 45.2663 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 27.2487 | 17.4603 | chrysemys_picta_bellii | ENSCPBP00000033897 | 64.375 | 41.25 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.6614 | 17.7249 | notechis_scutatus | ENSNSUP00000000321 | 59.1463 | 40.8537 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 26.7196 | 18.5185 | laticauda_laticaudata | ENSLLTP00000011393 | 64.7436 | 44.8718 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 25.3968 | 17.4603 | pseudonaja_textilis | ENSPTXP00000023744 | 66.6667 | 45.8333 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 62.963 | 48.1481 | erpetoichthys_calabaricus | ENSECRP00000001884 | 56.9378 | 43.5407 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 61.3757 | 45.7672 | erpetoichthys_calabaricus | ENSECRP00000001909 | 54.3326 | 40.5152 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 35.9788 | 24.6032 | anolis_carolinensis | ENSACAP00000024671 | 38.6364 | 26.4205 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 27.7778 | 18.7831 | naja_naja | ENSNNAP00000006949 | 36.0825 | 24.3986 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 70.1058 | 54.2328 | pygocentrus_nattereri | ENSPNAP00000027588 | 69.3717 | 53.6649 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 31.2169 | 21.164 | podarcis_muralis | ENSPMRP00000028150 | 41.4035 | 28.0702 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 55.0265 | 39.9471 | leptobrachium_leishanense | ENSLLEP00000022507 | 61.5385 | 44.6746 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 68.5185 | 52.6455 | scleropages_formosus | ENSSFOP00015078370 | 61.6667 | 47.381 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 27.7778 | 17.7249 | terrapene_carolina_triunguis | ENSTMTP00000003543 | 56.1497 | 35.8289 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 69.5767 | 57.672 | sinocyclocheilus_grahami | ENSSGRP00000087624 | 68.6684 | 56.9191 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 69.5767 | 57.672 | sinocyclocheilus_grahami | ENSSGRP00000099108 | 68.3117 | 56.6234 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 26.455 | 16.6667 | gopherus_evgoodei | ENSGEVP00005011338 | 62.1118 | 39.1304 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 68.5185 | 52.1164 | paramormyrops_kingsleyae | ENSPKIP00000003188 | 61.2293 | 46.5721 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 87.5661 | 75.9259 | myripristis_murdjan | ENSMMDP00005018370 | 86.423 | 74.9347 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 34.3915 | 23.8095 | salvator_merianae | ENSSMRP00000026400 | 37.3563 | 25.8621 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 33.3333 | 27.5132 | cyprinus_carpio_carpio | ENSCCRP00000016748 | 67.3797 | 55.615 |
| ENSGACG00000000821 | gasterosteus_aculeatus | ENSGACP00000001061 | 26.455 | 16.6667 | chelonoidis_abingdonii | ENSCABP00000029183 | 68.0272 | 42.8571 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
