Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases Cancer
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions N.A.
Localizations Stress granucle
BulkPerturb-seq N.A.

Description

Ensembl ID ENSG00000278637 Gene ID 8359 Accession 4781
Symbol H4C1 Alias H4C2;H4C3;H4C4;H4C5;H4C6;H4C8;H4C9;H4FA;H4-16;H4C11;H4C12;H4C13;H4C14;H4C15;H4C16;HIST1H4A Full Name H4 clustered histone 1
Status Confidence Length 402 bases Strand Plus strand
Position 6 : 26021649 - 26022050 RNA binding domain N.A.
Summary Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Aug 2015]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000278637homo_sapiensENSP00000484789100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000479794100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000443017100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000481486100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000462355100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000347168100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000479461100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000366974100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000480960100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000367034100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000462667100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000244537100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP00000366956100100homo_sapiensENSP00000479106100100
ENSG00000278637homo_sapiensENSP0000047787084.693984.6939homo_sapiensENSP0000047910680.582580.5825

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSG00000278637homo_sapiensENSP00000479106100100nomascus_leucogenysENSNLEP00000046925100100
ENSG00000278637homo_sapiensENSP00000479106100100pan_paniscusENSPPAP00000000659100100
ENSG00000278637homo_sapiensENSP00000479106100100loxodonta_africanaENSLAFP00000016306100100
ENSG00000278637homo_sapiensENSP00000479106100100bos_indicus_hybridENSBIXP00005006023100100
ENSG00000278637homo_sapiensENSP00000479106100100panthera_pardusENSPPRP00000024153100100
ENSG00000278637homo_sapiensENSP00000479106100100physeter_catodonENSPCTP00005007214100100
ENSG00000278637homo_sapiensENSP00000479106100100mus_musculusENSMUSP00000100546100100
ENSG00000278637homo_sapiensENSP00000479106100100phocoena_sinusENSPSNP00000007166100100
ENSG00000278637homo_sapiensENSP00000479106100100phocoena_sinusENSPSNP00000007175100100
ENSG00000278637homo_sapiensENSP00000479106100100rattus_norvegicusENSRNOP00000087795100100
ENSG00000278637homo_sapiensENSP00000479106100100microtus_ochrogasterENSMOCP00000001419100100
ENSG00000278637homo_sapiensENSP00000479106100100bos_taurusENSBTAP00000062765100100
ENSG00000278637homo_sapiensENSP00000479106100100cervus_hanglu_yarkandensisENSCHYP00000022532100100
ENSG00000278637homo_sapiensENSP00000479106100100propithecus_coquereliENSPCOP00000002858100100
ENSG00000278637homo_sapiensENSP0000047910610098.0583drosophila_melanogasterFBpp009111410098.0583
ENSG00000278637homo_sapiensENSP0000047910610098.0583drosophila_melanogasterFBpp009112210098.0583
ENSG00000278637homo_sapiensENSP0000047910610098.0583drosophila_melanogasterFBpp009112410098.0583
ENSG00000278637homo_sapiensENSP0000047910610098.0583drosophila_melanogasterFBpp009112610098.0583
ENSG00000278637homo_sapiensENSP0000047910699.029197.0874callorhinchus_miliiENSCMIP0000000332099.029197.0874
ENSG00000278637homo_sapiensENSP0000047910699.029197.0874callorhinchus_miliiENSCMIP0000000032099.029197.0874
ENSG00000278637homo_sapiensENSP00000479106100100latimeria_chalumnaeENSLACP00000004892100100
ENSG00000278637homo_sapiensENSP00000479106100100xiphophorus_maculatusENSXMAP00000024421100100
ENSG00000278637homo_sapiensENSP0000047910610099.0291ciona_savignyiENSCSAVP0000001713044.588744.1558
ENSG00000278637homo_sapiensENSP0000047910610099.0291ciona_savignyiENSCSAVP0000001353545.777845.3333
ENSG00000278637homo_sapiensENSP0000047910610099.0291ciona_savignyiENSCSAVP0000000094044.588744.1558
ENSG00000278637homo_sapiensENSP0000047910610099.0291ciona_savignyiENSCSAVP0000001722744.782644.3478
ENSG00000278637homo_sapiensENSP0000047910697.087492.233saccharomyces_cerevisiaeYBR009C97.087492.233
ENSG00000278637homo_sapiensENSP0000047910697.087492.233saccharomyces_cerevisiaeYNL030W97.087492.233
ENSG00000278637homo_sapiensENSP00000479106100100cyprinodon_variegatusENSCVAP00000011029100100
ENSG00000278637homo_sapiensENSP0000047910690.291390.2913paramormyrops_kingsleyaeENSPKIP00000038554100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0000781located_in chromosome, telomeric region1HDAHomo_sapiens(9606)Component
GO:0000786part_of nucleosome3IDA,IPI,TASHomo_sapiens(9606)Component
GO:0003677enables DNA binding2IBA,TASHomo_sapiens(9606)Function
GO:0003723enables RNA binding1HDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005576located_in extracellular region1TASHomo_sapiens(9606)Component
GO:0005634located_in nucleus2HDA,IDAHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm1TASHomo_sapiens(9606)Component
GO:0006334involved_in nucleosome assembly2IBA,IDAHomo_sapiens(9606)Process
GO:0016020located_in membrane1HDAHomo_sapiens(9606)Component
GO:0030527enables structural constituent of chromatin1IDAHomo_sapiens(9606)Function
GO:0032200involved_in telomere organization1TASHomo_sapiens(9606)Process
GO:0032991part_of protein-containing complex1IDAHomo_sapiens(9606)Component
GO:0043505part_of CENP-A containing nucleosome1IPIHomo_sapiens(9606)Component
GO:0045653involved_in negative regulation of megakaryocyte differentiation1IDAHomo_sapiens(9606)Process
GO:0046982enables protein heterodimerization activity1IEAHomo_sapiens(9606)Function
GO:0061644involved_in protein localization to CENP-A containing chromatin1NASHomo_sapiens(9606)Process
GO:0070062located_in extracellular exosome1HDAHomo_sapiens(9606)Component

Expression