RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
N.A.
Localizations
Nucleoli
BulkPerturb-seq
Ensembl ID ENSG00000258659 Gene ID
53840
Accession
10063
Symbol
TRIM34
Alias
IFP1;RNF21
Full Name
tripartite motif containing 34
Status
Confidence
Length
24635 bases
Strand
Plus strand
Position
11 : 5619764 - 5644398
RNA binding domain
SPRY
Summary
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, B-box type 1 and B-box type 2 domain, and a coiled-coil region. Expression of this gene is up-regulated by interferon. This gene is mapped to chromosome 11p15, where it resides within a TRIM gene cluster. Alternative splicing results in multiple transcript variants. A read-through transcript from the upstream TRIM6 gene has also been observed, which results in a fusion product from these neighboring family members. [provided by RefSeq, Oct 2010]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000402595
SPRY
PF00622
1.1e-09
1
ENSP00000422947
SPRY
PF00622
1.1e-09
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
TRIM34-204
ENST00000514226
2493
488aa
ENSP00000422947
TRIM34-201
ENST00000429814
2293
488aa
ENSP00000402595
TRIM34-202
ENST00000491385
933
No protein
-
TRIM34-203
ENST00000495668
851
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
18661 Erythrocyte Indices 6.686e-005 - 85276 Cognition Disorders 8E-10 26252872 85278 Cognitive Dysfunction 8E-10 26252872 88825 Cognition Disorders 9E-9 26252872 88827 Cognitive Dysfunction 9E-9 26252872
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000209 involved_in protein polyubiquitination 1 IBA Homo_sapiens(9606) Process GO:0003674 enables molecular_function 1 ND Homo_sapiens(9606) Function GO:0005654 is_active_in nucleoplasm 1 IBA Homo_sapiens(9606) Component GO:0005737 is_active_in cytoplasm 2 IBA,IDA Homo_sapiens(9606) Component GO:0005739 located_in mitochondrion 1 IEA Homo_sapiens(9606) Component GO:0005829 is_active_in cytosol 2 IBA,TAS Homo_sapiens(9606) Component GO:0008270 enables zinc ion binding 1 IEA Homo_sapiens(9606) Function GO:0010508 involved_in positive regulation of autophagy 1 IBA Homo_sapiens(9606) Process GO:0019901 enables protein kinase binding 1 IBA Homo_sapiens(9606) Function GO:0032880 involved_in regulation of protein localization 1 IBA Homo_sapiens(9606) Process GO:0042802 enables identical protein binding 1 IPI Homo_sapiens(9606) Function GO:0042803 enables protein homodimerization activity 1 IBA Homo_sapiens(9606) Function GO:0043123 involved_in positive regulation of I-kappaB kinase/NF-kappaB signaling 1 IBA Homo_sapiens(9606) Process GO:0045087 involved_in innate immune response 1 IBA Homo_sapiens(9606) Process GO:0046596 involved_in regulation of viral entry into host cell 1 IBA Homo_sapiens(9606) Process GO:0051091 involved_in positive regulation of DNA-binding transcription factor activity 1 IDA Homo_sapiens(9606) Process GO:0051092 involved_in positive regulation of NF-kappaB transcription factor activity 1 IBA Homo_sapiens(9606) Process GO:0051607 involved_in defense response to virus 1 IEA Homo_sapiens(9606) Process GO:0061630 enables ubiquitin protein ligase activity 1 IBA Homo_sapiens(9606) Function
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