RBPWorld - a comprehensive database of RNA Binding Proteins

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	mRNA
Moonlighting functions	N.A.
Localizations	N.A.
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000218823	Gene ID	56903	Accession	15970
Symbol	PAPOLB	Alias		Full Name
Status	Confidence	Length	4293 bases	Strand	Minus strand
Position	7 : 4857738 - 4862030	RNA binding domain	PAP_RNA-bind
Summary

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000384700	PAP_RNA-bind	PF04926	2.8e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PAPOLB-201	ENST00000404991	4293	637aa	ENSP00000384700

Gene Model

Click here to download ENSG00000218823's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000218823's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000218823	homo_sapiens	ENSP00000238714	62.6359	52.8533	homo_sapiens	ENSP00000384700	72.3705	61.0675
ENSG00000218823	homo_sapiens	ENSP00000216277	76.6443	72.2148	homo_sapiens	ENSP00000384700	89.6389	84.4584

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000218823	homo_sapiens	ENSP00000384700	98.2732	97.4882	pan_troglodytes	ENSPTRP00000093018	91.1208	90.393
ENSG00000218823	homo_sapiens	ENSP00000384700	85.8713	80.3768	dasypus_novemcinctus	ENSDNOP00000025480	78.705	73.6691
ENSG00000218823	homo_sapiens	ENSP00000384700	44.741	42.2292	callithrix_jacchus	ENSCJAP00000073525	93.1373	87.9085
ENSG00000218823	homo_sapiens	ENSP00000384700	87.4411	84.9294	macaca_fascicularis	ENSMFAP00000015743	91.4614	88.8342
ENSG00000218823	homo_sapiens	ENSP00000384700	45.2119	43.0141	vulpes_vulpes	ENSVVUP00000008155	84.9557	80.826
ENSG00000218823	homo_sapiens	ENSP00000384700	90.1099	85.4003	mus_spretus	MGP_SPRETEiJ_P0074737	89.4081	84.7352
ENSG00000218823	homo_sapiens	ENSP00000384700	44.113	41.9152	ailuropoda_melanoleuca	ENSAMEP00000037959	88.924	84.4937
ENSG00000218823	homo_sapiens	ENSP00000384700	42.5432	40.3454	oryctolagus_cuniculus	ENSOCUP00000017147	94.0972	89.2361
ENSG00000218823	homo_sapiens	ENSP00000384700	89.4819	83.6735	equus_caballus	ENSECAP00000082159	88.785	83.0218
ENSG00000218823	homo_sapiens	ENSP00000384700	89.6389	85.7143	canis_lupus_familiaris	ENSCAFP00845020126	84.4675	80.7692
ENSG00000218823	homo_sapiens	ENSP00000384700	12.7159	10.3611	panthera_pardus	ENSPPRP00000013600	77.1429	62.8571
ENSG00000218823	homo_sapiens	ENSP00000384700	11.9309	9.26217	panthera_pardus	ENSPPRP00000014404	69.0909	53.6364
ENSG00000218823	homo_sapiens	ENSP00000384700	89.011	84.9294	marmota_marmota_marmota	ENSMMMP00000008128	89.1509	85.0629
ENSG00000218823	homo_sapiens	ENSP00000384700	43.7991	41.9152	balaenoptera_musculus	ENSBMSP00010024974	93.9394	89.899
ENSG00000218823	homo_sapiens	ENSP00000384700	70.0157	66.248	balaenoptera_musculus	ENSBMSP00010012034	88.1423	83.3992
ENSG00000218823	homo_sapiens	ENSP00000384700	70.1727	65.1491	cavia_porcellus	ENSCPOP00000021033	83.3955	77.4254
ENSG00000218823	homo_sapiens	ENSP00000384700	88.383	84.1444	felis_catus	ENSFCAP00000055683	80.0854	76.2447
ENSG00000218823	homo_sapiens	ENSP00000384700	44.898	43.0141	ursus_americanus	ENSUAMP00000011245	90.7936	86.9841
ENSG00000218823	homo_sapiens	ENSP00000384700	43.1711	41.2873	bison_bison_bison	ENSBBBP00000000645	94.1781	90.0685
ENSG00000218823	homo_sapiens	ENSP00000384700	42.5432	41.1303	monodon_monoceros	ENSMMNP00015000841	92.8082	89.726
ENSG00000218823	homo_sapiens	ENSP00000384700	41.7582	40.6593	microcebus_murinus	ENSMICP00000045835	94.6619	92.1708
ENSG00000218823	homo_sapiens	ENSP00000384700	85.5573	80.2198	octodon_degus	ENSODEP00000013308	82.4508	77.3071
ENSG00000218823	homo_sapiens	ENSP00000384700	88.697	83.5165	jaculus_jaculus	ENSJJAP00000007911	81.4121	76.6571
ENSG00000218823	homo_sapiens	ENSP00000384700	88.54	83.2025	ovis_aries_rambouillet	ENSOARP00020013053	82.9412	77.9412
ENSG00000218823	homo_sapiens	ENSP00000384700	90.1099	85.4003	ursus_maritimus	ENSUMAP00000010143	90.5363	85.8044
ENSG00000218823	homo_sapiens	ENSP00000384700	90.2669	85.5573	mus_caroli	MGP_CAROLIEiJ_P0071916	89.5639	84.891
ENSG00000218823	homo_sapiens	ENSP00000384700	90.1099	85.4003	mus_musculus	ENSMUSP00000100595	89.4081	84.7352
ENSG00000218823	homo_sapiens	ENSP00000384700	90.2669	84.1444	dipodomys_ordii	ENSDORP00000021215	90.694	84.5426
ENSG00000218823	homo_sapiens	ENSP00000384700	91.6797	89.011	aotus_nancymaae	ENSANAP00000030660	95.581	92.7987
ENSG00000218823	homo_sapiens	ENSP00000384700	37.9906	36.4207	phocoena_sinus	ENSPSNP00000020698	80.6667	77.3333
ENSG00000218823	homo_sapiens	ENSP00000384700	83.3595	79.1209	prolemur_simus	ENSPSMP00000001370	88.796	84.2809
ENSG00000218823	homo_sapiens	ENSP00000384700	43.1711	41.2873	bos_mutus	ENSBMUP00000027703	94.1781	90.0685
ENSG00000218823	homo_sapiens	ENSP00000384700	87.1272	82.8885	myotis_lucifugus	ENSMLUP00000019113	87.2642	83.0189
ENSG00000218823	homo_sapiens	ENSP00000384700	43.6421	42.0722	rhinolophus_ferrumequinum	ENSRFEP00010018889	92.9766	89.6321
ENSG00000218823	homo_sapiens	ENSP00000384700	45.3689	43.3281	neovison_vison	ENSNVIP00000006776	93.8312	89.6104
ENSG00000218823	homo_sapiens	ENSP00000384700	89.325	84.7724	bos_taurus	ENSBTAP00000062890	83.1871	78.9474
ENSG00000218823	homo_sapiens	ENSP00000384700	10.0471	9.26217	canis_lupus_dingo	ENSCAFP00020021917	85.3333	78.6667
ENSG00000218823	homo_sapiens	ENSP00000384700	42.7002	40.0314	sciurus_vulgaris	ENSSVLP00005022820	86.3492	80.9524
ENSG00000218823	homo_sapiens	ENSP00000384700	24.1758	22.449	bos_grunniens	ENSBGRP00000032960	92.7711	86.1446
ENSG00000218823	homo_sapiens	ENSP00000384700	86.0283	80.6907	chinchilla_lanigera	ENSCLAP00000006647	87.4003	81.9777
ENSG00000218823	homo_sapiens	ENSP00000384700	89.325	84.9294	cervus_hanglu_yarkandensis	ENSCHYP00000035408	89.7476	85.3312
ENSG00000218823	homo_sapiens	ENSP00000384700	88.383	83.5165	catagonus_wagneri	ENSCWAP00000025735	79.5198	75.1412
ENSG00000218823	homo_sapiens	ENSP00000384700	91.3658	88.0691	otolemur_garnettii	ENSOGAP00000016810	82.5532	79.5745
ENSG00000218823	homo_sapiens	ENSP00000384700	40.8163	38.6185	urocitellus_parryii	ENSUPAP00010014498	91.8728	86.9258
ENSG00000218823	homo_sapiens	ENSP00000384700	89.9529	85.4003	moschus_moschiferus	ENSMMSP00000025011	90.2362	85.6693
ENSG00000218823	homo_sapiens	ENSP00000384700	90.2669	84.7724	mus_pahari	MGP_PahariEiJ_P0060130	89.5639	84.1122
ENSG00000218823	homo_sapiens	ENSP00000384700	51.3344	38.3046	caenorhabditis_elegans	T15H9.6.1	59.0253	44.0433
ENSG00000218823	homo_sapiens	ENSP00000384700	51.1774	38.7755	caenorhabditis_elegans	F43G6.5.1	58.8448	44.5848
ENSG00000218823	homo_sapiens	ENSP00000384700	54.7881	40.0314	caenorhabditis_elegans	Y32F6A.3.1	53.2824	38.9313
ENSG00000218823	homo_sapiens	ENSP00000384700	64.0502	50.2355	drosophila_melanogaster	FBpp0303281	49.3349	38.6941
ENSG00000218823	homo_sapiens	ENSP00000384700	43.7991	33.438	cyclopterus_lumpus	ENSCLMP00005037493	67.5545	51.5738
ENSG00000218823	homo_sapiens	ENSP00000384700	45.3689	32.4961	haplochromis_burtoni	ENSHBUP00000013937	71.8905	51.4925
ENSG00000218823	homo_sapiens	ENSP00000384700	45.5259	32.6531	astatotilapia_calliptera	ENSACLP00000037268	66.5138	47.7064
ENSG00000218823	homo_sapiens	ENSP00000384700	45.3689	32.3391	neolamprologus_brichardi	ENSNBRP00000025146	67.6815	48.2436
ENSG00000218823	homo_sapiens	ENSP00000384700	43.1711	32.6531	amphiprion_percula	ENSAPEP00000023219	61.3839	46.4286
ENSG00000218823	homo_sapiens	ENSP00000384700	31.8681	24.9608	amphiprion_ocellaris	ENSAOCP00000016740	73.0216	57.1942
ENSG00000218823	homo_sapiens	ENSP00000384700	44.584	33.595	amphiprion_ocellaris	ENSAOCP00000013307	62.5551	47.1366
ENSG00000218823	homo_sapiens	ENSP00000384700	47.2527	32.1821	saccharomyces_cerevisiae	YKR002W	52.993	36.0915
ENSG00000218823	homo_sapiens	ENSP00000384700	44.741	33.752	labrus_bergylta	ENSLBEP00000008651	71.25	53.75
ENSG00000218823	homo_sapiens	ENSP00000384700	45.6829	32.3391	pundamilia_nyererei	ENSPNYP00000029857	70.46	49.8789
ENSG00000218823	homo_sapiens	ENSP00000384700	30.7692	24.3328	acanthochromis_polyacanthus	ENSAPOP00000034030	76.2646	60.3113
ENSG00000218823	homo_sapiens	ENSP00000384700	18.3673	13.8148	larimichthys_crocea	ENSLCRP00005021001	72.6708	54.6584
ENSG00000218823	homo_sapiens	ENSP00000384700	45.5259	32.6531	maylandia_zebra	ENSMZEP00005013592	66.5138	47.7064

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003723	enables RNA binding	1	IEA	Homo_sapiens(9606)	Function
GO:0005524	enables ATP binding	1	IEA	Homo_sapiens(9606)	Function
GO:0005634	is_active_in nucleus	1	IBA	Homo_sapiens(9606)	Component
GO:0005737	located_in cytoplasm	1	IEA	Homo_sapiens(9606)	Component
GO:0006378	involved_in mRNA polyadenylation	1	IBA	Homo_sapiens(9606)	Process
GO:0046872	enables metal ion binding	1	IEA	Homo_sapiens(9606)	Function
GO:1990817	enables poly(A) RNA polymerase activity	1	IEA	Homo_sapiens(9606)	Function

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression