RBP Type
Canonical_RBPs
Diseases
CancerSARS-COV-2
Drug
N.A.
Main interacting RNAs
mRNA
Moonlighting functions
N.A.
Localizations
P-body
BulkPerturb-seq
N.A.
Ensembl ID ENSG00000213516 Gene ID
494115
Accession
25073
Symbol
RBMXL1
Alias
RBM1
Full Name
RBMX like 1
Status
Confidence
Length
13505 bases
Strand
Minus strand
Position
1 : 88979456 - 88992960
RNA binding domain
RBM1CTR , RRM_1
Summary
This gene represents a retrogene of RNA binding motif protein, X-linked (RBMX), which is located on chromosome X. While all introns in the coding sequence have been processed out compared to the RBMX locus, the ORF is intact and there is specific evidence for transcription at this location. The preservation of the ORF by purifying selection in all Old World monkeys carrying it suggests that this locus is likely to be functional, possibly during male meiosis when X chromosomal genes are silenced or during haploid stages of spermatogenesis. This gene shares 5' exon structure with the cysteine conjugate-beta lyase 2 locus on chromosome 1, but the coding sequences are non-overlapping. Alternative splicing results in two transcript variants. [provided by RefSeq, Jun 2009]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000490152
RRM_1
PF00076
5e-23
1
ENSP00000318415
RRM_1
PF00076
2.6e-22
1
ENSP00000318415
RBM1CTR
PF08081
4.7e-22
2
ENSP00000446099
RRM_1
PF00076
2.6e-22
1
ENSP00000446099
RBM1CTR
PF08081
4.7e-22
2
ENSP00000498248
RRM_1
PF00076
2.6e-22
1
ENSP00000498248
RBM1CTR
PF08081
4.7e-22
2
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
23704925
Comprehensive genomic characterization of cutaneous malignant melanoma cell lines derived from metastatic lesions by whole-exome sequencing and SNP array profiling.
Ingrid Cifola
2013-01-01
PloS one
Name
Transcript ID
bp
Protein
Translation ID
RBMXL1-204
ENST00000652648
4756
390aa
ENSP00000498248
RBMXL1-201
ENST00000321792
4799
390aa
ENSP00000318415
RBMXL1-202
ENST00000399794
5084
390aa
ENSP00000446099
RBMXL1-203
ENST00000413769
991
158aa
ENSP00000490152
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000213516 homo_sapiens ENSP00000359645 95.9079 95.1407 homo_sapiens ENSP00000498248 96.1538 95.3846 ENSG00000213516 homo_sapiens ENSP00000295971 14.1653 8.76897 homo_sapiens ENSP00000498248 21.5385 13.3333 ENSG00000213516 homo_sapiens ENSP00000304139 75.5102 69.1327 homo_sapiens ENSP00000498248 75.8974 69.4872 ENSG00000213516 homo_sapiens ENSP00000417451 22.7741 19.3065 homo_sapiens ENSP00000498248 62.3077 52.8205 ENSG00000213516 homo_sapiens ENSP00000478691 41.6422 27.8592 homo_sapiens ENSP00000498248 36.4103 24.359 ENSG00000213516 homo_sapiens ENSP00000445366 15.2975 9.91501 homo_sapiens ENSP00000498248 13.8462 8.97436 ENSG00000213516 homo_sapiens ENSP00000341826 41.129 25.8065 homo_sapiens ENSP00000498248 39.2308 24.6154 ENSG00000213516 homo_sapiens ENSP00000350090 45 28.75 homo_sapiens ENSP00000498248 36.9231 23.5897 ENSG00000213516 homo_sapiens ENSP00000493805 46.875 29.375 homo_sapiens ENSP00000498248 38.4615 24.1026 ENSG00000213516 homo_sapiens ENSP00000376309 37.5661 25.9259 homo_sapiens ENSP00000498248 36.4103 25.1282 ENSG00000213516 homo_sapiens ENSP00000284073 35.6707 23.7805 homo_sapiens ENSP00000498248 30 20 ENSG00000213516 homo_sapiens ENSP00000310471 23.6769 16.7131 homo_sapiens ENSP00000498248 21.7949 15.3846 ENSG00000213516 homo_sapiens ENSP00000309166 22.5275 15.6593 homo_sapiens ENSP00000498248 21.0256 14.6154 ENSG00000213516 homo_sapiens ENSP00000401371 23.8342 13.9896 homo_sapiens ENSP00000498248 23.5897 13.8462 ENSG00000213516 homo_sapiens ENSP00000257552 31.768 20.9945 homo_sapiens ENSP00000498248 29.4872 19.4872 ENSG00000213516 homo_sapiens ENSP00000281722 16.5103 8.81801 homo_sapiens ENSP00000498248 22.5641 12.0513 ENSG00000213516 homo_sapiens ENSP00000352956 13.6674 7.74487 homo_sapiens ENSP00000498248 15.3846 8.71795 ENSG00000213516 homo_sapiens ENSP00000362936 22.2997 13.2404 homo_sapiens ENSP00000498248 16.4103 9.74359 ENSG00000213516 homo_sapiens ENSP00000313199 28.4507 19.1549 homo_sapiens ENSP00000498248 25.8974 17.4359 ENSG00000213516 homo_sapiens ENSP00000253363 12.8302 8.11321 homo_sapiens ENSP00000498248 17.4359 11.0256 ENSG00000213516 homo_sapiens ENSP00000363109 15.6997 8.87372 homo_sapiens ENSP00000498248 23.5897 13.3333 ENSG00000213516 homo_sapiens ENSP00000316042 36.7213 26.5574 homo_sapiens ENSP00000498248 28.7179 20.7692 ENSG00000213516 homo_sapiens ENSP00000318195 14.0845 8.16901 homo_sapiens ENSP00000498248 25.641 14.8718 ENSG00000213516 homo_sapiens ENSP00000394902 23.4667 13.3333 homo_sapiens ENSP00000498248 22.5641 12.8205 ENSG00000213516 homo_sapiens ENSP00000351108 31.0241 19.8795 homo_sapiens ENSP00000498248 26.4103 16.9231 ENSG00000213516 homo_sapiens ENSP00000261741 10.7292 5.3125 homo_sapiens ENSP00000498248 26.4103 13.0769 ENSG00000213516 homo_sapiens ENSP00000233078 36.1179 24.57 homo_sapiens ENSP00000498248 37.6923 25.641 ENSG00000213516 homo_sapiens ENSP00000372127 56.25 46.1694 homo_sapiens ENSP00000498248 71.5385 58.7179 ENSG00000213516 homo_sapiens ENSP00000372105 56.25 45.9677 homo_sapiens ENSP00000498248 71.5385 58.4615 ENSG00000213516 homo_sapiens ENSP00000372484 56.4516 46.371 homo_sapiens ENSP00000498248 71.7949 58.9744 ENSG00000213516 homo_sapiens ENSP00000372154 56.0484 46.1694 homo_sapiens ENSP00000498248 71.2821 58.7179 ENSG00000213516 homo_sapiens ENSP00000250831 56.25 46.371 homo_sapiens ENSP00000498248 71.5385 58.9744 ENSG00000213516 homo_sapiens ENSP00000307155 56.25 46.371 homo_sapiens ENSP00000498248 71.5385 58.9744 ENSG00000213516 homo_sapiens ENSP00000295470 22.619 15 homo_sapiens ENSP00000498248 24.359 16.1538 ENSG00000213516 homo_sapiens ENSP00000466025 43.4343 36.0269 homo_sapiens ENSP00000498248 33.0769 27.4359 ENSG00000213516 homo_sapiens ENSP00000365950 70.0637 56.051 homo_sapiens ENSP00000498248 28.2051 22.5641
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000213516 homo_sapiens ENSP00000498248 69.7436 66.6667 nomascus_leucogenys ENSNLEP00000041647 80.9524 77.381 ENSG00000213516 homo_sapiens ENSP00000498248 98.4615 98.2051 pongo_abelii ENSPPYP00000036869 74.4186 74.2248 ENSG00000213516 homo_sapiens ENSP00000498248 82.3077 80.2564 gorilla_gorilla ENSGGOP00000045397 77.3494 75.4217 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 89.4872 gorilla_gorilla ENSGGOP00000033695 82.4766 81.5421 ENSG00000213516 homo_sapiens ENSP00000498248 94.8718 91.5385 ornithorhynchus_anatinus ENSOANP00000018487 88.0952 85 ENSG00000213516 homo_sapiens ENSP00000498248 93.0769 88.4615 sarcophilus_harrisii ENSSHAP00000027693 86.4286 82.1429 ENSG00000213516 homo_sapiens ENSP00000498248 88.4615 83.0769 sarcophilus_harrisii ENSSHAP00000030612 88.9175 83.5052 ENSG00000213516 homo_sapiens ENSP00000498248 52.3077 50 notamacropus_eugenii ENSMEUP00000014514 51.7766 49.4924 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 86.4103 notamacropus_eugenii ENSMEUP00000012614 90.1015 85.533 ENSG00000213516 homo_sapiens ENSP00000498248 56.9231 53.3333 dasypus_novemcinctus ENSDNOP00000033209 74.7475 70.0337 ENSG00000213516 homo_sapiens ENSP00000498248 72.5641 67.9487 dasypus_novemcinctus ENSDNOP00000016918 73.6979 69.0104 ENSG00000213516 homo_sapiens ENSP00000498248 80 78.7179 echinops_telfairi ENSETEP00000010687 79.5918 78.3163 ENSG00000213516 homo_sapiens ENSP00000498248 98.7179 98.2051 macaca_fascicularis ENSMFAP00000052498 98.4655 97.954 ENSG00000213516 homo_sapiens ENSP00000498248 98.7179 98.2051 macaca_mulatta ENSMMUP00000060599 98.4655 97.954 ENSG00000213516 homo_sapiens ENSP00000498248 96.1538 95.1282 papio_anubis ENSPANP00000011110 95.9079 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 58.4615 56.4103 vulpes_vulpes ENSVVUP00000012890 82.6087 79.7101 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.8462 capra_hircus ENSCHIP00000011466 93.924 92.6582 ENSG00000213516 homo_sapiens ENSP00000498248 40 38.2051 panthera_leo ENSPLOP00000025477 84.7826 80.9783 ENSG00000213516 homo_sapiens ENSP00000498248 76.9231 74.1026 bos_indicus_hybrid ENSBIXP00005022713 79.3651 76.455 ENSG00000213516 homo_sapiens ENSP00000498248 72.0513 70.7692 oryctolagus_cuniculus ENSOCUP00000037918 89.7764 88.1789 ENSG00000213516 homo_sapiens ENSP00000498248 63.0769 62.0513 canis_lupus_familiaris ENSCAFP00845030800 84.2466 82.8767 ENSG00000213516 homo_sapiens ENSP00000498248 72.5641 71.2821 balaenoptera_musculus ENSBMSP00010005814 94.6488 92.9766 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 cavia_porcellus ENSCPOP00000010937 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 93.0769 88.7179 monodelphis_domestica ENSMODP00000054495 92.132 87.8173 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 bison_bison_bison ENSBBBP00000015952 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 67.1795 64.8718 microcebus_murinus ENSMICP00000037953 92.9078 89.7163 ENSG00000213516 homo_sapiens ENSP00000498248 74.6154 72.3077 microcebus_murinus ENSMICP00000041717 92.381 89.5238 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 ovis_aries_rambouillet ENSOARP00020020193 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 88.2051 86.9231 ursus_maritimus ENSUMAP00000014473 95.2909 93.9058 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.8462 mus_caroli MGP_CAROLIEiJ_P0085076 95.6186 94.3299 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.8462 mus_musculus ENSMUSP00000048153 95.6186 94.3299 ENSG00000213516 homo_sapiens ENSP00000498248 94.8718 93.3333 mus_musculus ENSMUSP00000154633 95.3608 93.8144 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 aotus_nancymaae ENSANAP00000021183 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 88.9744 85.641 saimiri_boliviensis_boliviensis ENSSBOP00000019840 92.0424 88.5942 ENSG00000213516 homo_sapiens ENSP00000498248 95.3846 94.1026 mesocricetus_auratus ENSMAUP00000017933 95.8763 94.5876 ENSG00000213516 homo_sapiens ENSP00000498248 96.1538 95.1282 carlito_syrichta ENSTSYP00000034058 95.9079 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 68.7179 68.2051 panthera_tigris_altaica ENSPTIP00000025946 94.6996 93.9929 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.5897 rattus_norvegicus ENSRNOP00000079505 95.6186 94.0722 ENSG00000213516 homo_sapiens ENSP00000498248 93.0769 91.5385 rattus_norvegicus ENSRNOP00000074646 92.602 91.0714 ENSG00000213516 homo_sapiens ENSP00000498248 72.3077 69.7436 prolemur_simus ENSPSMP00000029289 89.8089 86.6242 ENSG00000213516 homo_sapiens ENSP00000498248 94.8718 93.5897 microtus_ochrogaster ENSMOCP00000019285 95.3608 94.0722 ENSG00000213516 homo_sapiens ENSP00000498248 77.4359 76.6667 sorex_araneus ENSSARP00000000360 95.2681 94.3218 ENSG00000213516 homo_sapiens ENSP00000498248 95.3846 94.1026 peromyscus_maniculatus_bairdii ENSPEMP00000004024 95.8763 94.5876 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 bos_mutus ENSBMUP00000009293 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.8462 mus_spicilegus ENSMSIP00000035263 95.6186 94.3299 ENSG00000213516 homo_sapiens ENSP00000498248 69.4872 65.1282 cricetulus_griseus_chok1gshd ENSCGRP00001005561 80.4154 75.3709 ENSG00000213516 homo_sapiens ENSP00000498248 95.3846 94.1026 cricetulus_griseus_chok1gshd ENSCGRP00001012267 95.8763 94.5876 ENSG00000213516 homo_sapiens ENSP00000498248 89.2308 83.3333 vombatus_ursinus ENSVURP00010000419 88.7755 82.9082 ENSG00000213516 homo_sapiens ENSP00000498248 93.0769 88.4615 vombatus_ursinus ENSVURP00010021464 92.3664 87.7863 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 bos_taurus ENSBTAP00000017696 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 94.359 93.3333 heterocephalus_glaber_female ENSHGLP00000049310 94.1176 93.0946 ENSG00000213516 homo_sapiens ENSP00000498248 95.641 94.8718 heterocephalus_glaber_female ENSHGLP00000015461 95.3964 94.6292 ENSG00000213516 homo_sapiens ENSP00000498248 37.4359 34.6154 canis_lupus_dingo ENSCAFP00020032287 66.9725 61.9266 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.8462 nannospalax_galili ENSNGAP00000010746 95.6186 94.3299 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 bos_grunniens ENSBGRP00000029504 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 chinchilla_lanigera ENSCLAP00000003150 95.6522 94.8849 ENSG00000213516 homo_sapiens ENSP00000498248 95.8974 95.1282 cervus_hanglu_yarkandensis ENSCHYP00000025287 94.2066 93.4509 ENSG00000213516 homo_sapiens ENSP00000498248 94.8718 93.8462 otolemur_garnettii ENSOGAP00000007019 74 73.2 ENSG00000213516 homo_sapiens ENSP00000498248 80.5128 79.2308 cebus_imitator ENSCCAP00000039060 91.0145 89.5652 ENSG00000213516 homo_sapiens ENSP00000498248 77.9487 75.641 cebus_imitator ENSCCAP00000011578 84.9162 82.4022 ENSG00000213516 homo_sapiens ENSP00000498248 82.3077 78.7179 urocitellus_parryii ENSUPAP00010016248 69.0323 66.0215 ENSG00000213516 homo_sapiens ENSP00000498248 72.0513 71.5385 moschus_moschiferus ENSMMSP00000001991 94.6128 93.9394 ENSG00000213516 homo_sapiens ENSP00000498248 64.8718 62.0513 moschus_moschiferus ENSMMSP00000024842 84.6154 80.9365 ENSG00000213516 homo_sapiens ENSP00000498248 71.5385 71.0256 moschus_moschiferus ENSMMSP00000008184 93.9394 93.266 ENSG00000213516 homo_sapiens ENSP00000498248 71.0256 69.4872 moschus_moschiferus ENSMMSP00000014579 92.0266 90.0332 ENSG00000213516 homo_sapiens ENSP00000498248 92.5641 91.7949 rhinopithecus_roxellana ENSRROP00000035391 95 94.2105 ENSG00000213516 homo_sapiens ENSP00000498248 89.7436 87.6923 rhinopithecus_roxellana ENSRROP00000016206 91.8635 89.7638 ENSG00000213516 homo_sapiens ENSP00000498248 95.1282 93.8462 mus_pahari MGP_PahariEiJ_P0053380 95.6186 94.3299 ENSG00000213516 homo_sapiens ENSP00000498248 75.641 67.6923 callorhinchus_milii ENSCMIP00000025395 77.2251 69.1099 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 87.9487 chrysemys_picta_bellii ENSCPBP00000037691 93.1758 90.0262 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 sphenodon_punctatus ENSSPUP00000019039 90.051 86.9898 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 87.6923 crocodylus_porosus ENSCPRP00005012084 87.8713 84.6535 ENSG00000213516 homo_sapiens ENSP00000498248 89.4872 85.8974 laticauda_laticaudata ENSLLTP00000005374 91.1227 87.4674 ENSG00000213516 homo_sapiens ENSP00000498248 89.4872 85.8974 notechis_scutatus ENSNSUP00000022507 91.1227 87.4674 ENSG00000213516 homo_sapiens ENSP00000498248 89.7436 86.1538 pseudonaja_textilis ENSPTXP00000019419 91.3838 87.7285 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 anas_platyrhynchos_platyrhynchos ENSAPLP00000029953 91.6883 88.5714 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 gallus_gallus ENSGALP00010022127 91.6883 88.5714 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 meleagris_gallopavo ENSMGAP00000003316 91.6883 88.5714 ENSG00000213516 homo_sapiens ENSP00000498248 90 86.9231 serinus_canaria ENSSCAP00000004355 91.1688 88.0519 ENSG00000213516 homo_sapiens ENSP00000498248 90 86.9231 parus_major ENSPMJP00000000364 91.1688 88.0519 ENSG00000213516 homo_sapiens ENSP00000498248 90 86.6667 anolis_carolinensis ENSACAP00000009421 91.1688 87.7922 ENSG00000213516 homo_sapiens ENSP00000498248 87.6923 83.8462 naja_naja ENSNNAP00000027834 90.2375 86.2797 ENSG00000213516 homo_sapiens ENSP00000498248 91.2821 87.9487 podarcis_muralis ENSPMRP00000034850 83.5681 80.5164 ENSG00000213516 homo_sapiens ENSP00000498248 90 86.9231 geospiza_fortis ENSGFOP00000017755 91.1688 88.0519 ENSG00000213516 homo_sapiens ENSP00000498248 90 86.9231 taeniopygia_guttata ENSTGUP00000002202 91.1688 88.0519 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 88.2051 salvator_merianae ENSSMRP00000011336 92.2078 89.3506 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 87.9487 pelodiscus_sinensis ENSPSIP00000012560 91.9689 88.8601 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 87.9487 gopherus_evgoodei ENSGEVP00005023814 93.1758 90.0262 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 87.9487 chelonoidis_abingdonii ENSCABP00000013346 93.1758 90.0262 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 struthio_camelus_australis ENSSCUP00000022386 89.3671 86.3291 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 anser_brachyrhynchus ENSABRP00000013588 83.2547 80.4245 ENSG00000213516 homo_sapiens ENSP00000498248 90.2564 86.9231 strigops_habroptila ENSSHBP00005024881 87.5622 84.3284 ENSG00000213516 homo_sapiens ENSP00000498248 91.0256 87.9487 terrapene_carolina_triunguis ENSTMTP00000032456 93.1758 90.0262 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 aquila_chrysaetos_chrysaetos ENSACCP00020024215 91.6883 88.5714 ENSG00000213516 homo_sapiens ENSP00000498248 90 86.9231 ficedula_albicollis ENSFALP00000003922 91.1688 88.0519 ENSG00000213516 homo_sapiens ENSP00000498248 90.5128 87.4359 coturnix_japonica ENSCJPP00005020311 91.6883 88.5714 ENSG00000213516 homo_sapiens ENSP00000498248 81.5385 75.8974 leptobrachium_leishanense ENSLLEP00000020574 82.3834 76.6839
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0003723 enables RNA binding 1 IBA Homo_sapiens(9606) Function GO:0005681 part_of spliceosomal complex 1 IBA Homo_sapiens(9606) Component GO:0006397 involved_in mRNA processing 1 IEA Homo_sapiens(9606) Process GO:0008380 involved_in RNA splicing 1 IEA Homo_sapiens(9606) Process GO:0048026 involved_in positive regulation of mRNA splicing, via spliceosome 1 IBA Homo_sapiens(9606) Process
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