Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000204610 Gene ID 89870 Accession 16284
Symbol TRIM15 Alias RNF93;ZNFB7;ZNF178 Full Name tripartite motif containing 15
Status Confidence Length 9488 bases Strand Plus strand
Position 6 : 30163206 - 30172693 RNA binding domain SPRY
Summary The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to the cytoplasm. Alternatively spliced transcript variants have been described, but their biological validity has not been determined. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000484001 SPRY PF00622 7.1e-11 1
ENSP00000365884 SPRY PF00622 1.1e-10 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
12601Psoriasis1.675E-1719680446
12919Multiple Sclerosis1.3E-519010793
12927Multiple Sclerosis1.7E-719010793
52144Child Development Disorders, Pervasive2.7000000E-005-
52150Child Development Disorders, Pervasive2.4000000E-005-
52163Child Development Disorders, Pervasive2.9000000E-005-
52164Child Development Disorders, Pervasive3.3000000E-005-
52176Child Development Disorders, Pervasive7.3600000E-006-
52180Child Development Disorders, Pervasive2.9000000E-005-
52195Child Development Disorders, Pervasive7.8500000E-006-
52197Child Development Disorders, Pervasive3.3000000E-005-

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003713enables transcription coactivator activity1IDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634is_active_in nucleus1IDAHomo_sapiens(9606)Component
GO:0005737is_active_in cytoplasm1IBAHomo_sapiens(9606)Component
GO:0005925located_in focal adhesion1IEAHomo_sapiens(9606)Component
GO:0007500involved_in mesodermal cell fate determination1TASHomo_sapiens(9606)Process
GO:0008270enables zinc ion binding1IEAHomo_sapiens(9606)Function
GO:0016567involved_in protein ubiquitination1IBAHomo_sapiens(9606)Process
GO:0032481involved_in positive regulation of type I interferon production1IMPHomo_sapiens(9606)Process
GO:0044790involved_in suppression of viral release by host2IDA,IMPHomo_sapiens(9606)Process
GO:0045087involved_in innate immune response1IMPHomo_sapiens(9606)Process
GO:0045893involved_in positive regulation of DNA-templated transcription1IEAHomo_sapiens(9606)Process
GO:0051091involved_in positive regulation of DNA-binding transcription factor activity1IMPHomo_sapiens(9606)Process
GO:0051092involved_in positive regulation of NF-kappaB transcription factor activity2IBA,IDAHomo_sapiens(9606)Process
GO:0061630enables ubiquitin protein ligase activity1IBAHomo_sapiens(9606)Function
GO:0140313enables molecular sequestering activity1IDAHomo_sapiens(9606)Function
GO:1900246involved_in positive regulation of RIG-I signaling pathway1IMPHomo_sapiens(9606)Process
GO:1901223involved_in negative regulation of NIK/NF-kappaB signaling1IDAHomo_sapiens(9606)Process
GO:1901253involved_in negative regulation of intracellular transport of viral material1IMPHomo_sapiens(9606)Process

Expression