Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000204599 Gene ID 56658 Accession 10065
Symbol TRIM39 Alias Full Name
Status Confidence Length 17251 bases Strand Plus strand
Position 6 : 30326479 - 30343729 RNA binding domain SPRY
Summary

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000365847 SPRY PF00622 1.6e-20 1
ENSP00000379797 SPRY PF00622 1.6e-20 1
ENSP00000379800 SPRY PF00622 1.6e-20 1
ENSP00000365844 SPRY PF00622 1.9e-20 1
ENSP00000379796 SPRY PF00622 1.9e-20 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
22943Body Height1.1710000E-006-
23341Body Height4.2640000E-005-
106400Lupus Erythematosus, Cutaneous2E-1125827949

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634located_in nucleus1IDAHomo_sapiens(9606)Component
GO:0005737is_active_in cytoplasm1IBAHomo_sapiens(9606)Component
GO:0005739located_in mitochondrion1IDAHomo_sapiens(9606)Component
GO:0005829is_active_in cytosol2IBA,IDAHomo_sapiens(9606)Component
GO:0006915involved_in apoptotic process1IEAHomo_sapiens(9606)Process
GO:0007095involved_in mitotic G2 DNA damage checkpoint signaling1IMPHomo_sapiens(9606)Process
GO:0008270enables zinc ion binding1IEAHomo_sapiens(9606)Function
GO:0016567involved_in protein ubiquitination2IBA,IEAHomo_sapiens(9606)Process
GO:0032435involved_in negative regulation of proteasomal ubiquitin-dependent protein catabolic process2IBA,IMPHomo_sapiens(9606)Process
GO:0042802enables identical protein binding1IPIHomo_sapiens(9606)Function
GO:0043124involved_in negative regulation of I-kappaB kinase/NF-kappaB signaling1IMPHomo_sapiens(9606)Process
GO:0050821involved_in protein stabilization2IBA,IMPHomo_sapiens(9606)Process
GO:0061630enables ubiquitin protein ligase activity1IBAHomo_sapiens(9606)Function
GO:1902806involved_in regulation of cell cycle G1/S phase transition1IMPHomo_sapiens(9606)Process
GO:2000059involved_in negative regulation of ubiquitin-dependent protein catabolic process1IDAHomo_sapiens(9606)Process
GO:2001235involved_in positive regulation of apoptotic signaling pathway2IBA,IDAHomo_sapiens(9606)Process

Expression