| RBP Type |
Canonical_RBPs |
| Diseases |
N.A. |
| Drug |
N.A. |
| Main interacting RNAs |
N.A. |
| Moonlighting functions |
E3 ligase |
| Localizations |
N.A. |
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSG00000204599 | Gene ID |
56658 |
Accession |
10065 |
| Symbol |
TRIM39 |
Alias |
|
Full Name |
|
| Status |
Confidence |
Length |
17251 bases |
Strand |
Plus strand |
| Position |
6 : 30326479 - 30343729 |
RNA binding domain |
SPRY |
| Summary |
|
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSP00000365847 |
SPRY |
PF00622 |
1.6e-20 |
1 |
| ENSP00000379797 |
SPRY |
PF00622 |
1.6e-20 |
1 |
| ENSP00000379800 |
SPRY |
PF00622 |
1.6e-20 |
1 |
| ENSP00000365844 |
SPRY |
PF00622 |
1.9e-20 |
1 |
| ENSP00000379796 |
SPRY |
PF00622 |
1.9e-20 |
1 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| 22943 | Body Height | 1.1710000E-006 | - |
| 23341 | Body Height | 4.2640000E-005 | - |
| 106400 | Lupus Erythematosus, Cutaneous | 2E-11 | 25827949 |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
| GO:0005515 | enables protein binding | 1 | IPI | Homo_sapiens(9606) | Function |
| GO:0005634 | located_in nucleus | 1 | IDA | Homo_sapiens(9606) | Component |
| GO:0005737 | is_active_in cytoplasm | 1 | IBA | Homo_sapiens(9606) | Component |
| GO:0005739 | located_in mitochondrion | 1 | IDA | Homo_sapiens(9606) | Component |
| GO:0005829 | is_active_in cytosol | 2 | IBA,IDA | Homo_sapiens(9606) | Component |
| GO:0006915 | involved_in apoptotic process | 1 | IEA | Homo_sapiens(9606) | Process |
| GO:0007095 | involved_in mitotic G2 DNA damage checkpoint signaling | 1 | IMP | Homo_sapiens(9606) | Process |
| GO:0008270 | enables zinc ion binding | 1 | IEA | Homo_sapiens(9606) | Function |
| GO:0016567 | involved_in protein ubiquitination | 2 | IBA,IEA | Homo_sapiens(9606) | Process |
| GO:0032435 | involved_in negative regulation of proteasomal ubiquitin-dependent protein catabolic process | 2 | IBA,IMP | Homo_sapiens(9606) | Process |
| GO:0042802 | enables identical protein binding | 1 | IPI | Homo_sapiens(9606) | Function |
| GO:0043124 | involved_in negative regulation of I-kappaB kinase/NF-kappaB signaling | 1 | IMP | Homo_sapiens(9606) | Process |
| GO:0050821 | involved_in protein stabilization | 2 | IBA,IMP | Homo_sapiens(9606) | Process |
| GO:0061630 | enables ubiquitin protein ligase activity | 1 | IBA | Homo_sapiens(9606) | Function |
| GO:1902806 | involved_in regulation of cell cycle G1/S phase transition | 1 | IMP | Homo_sapiens(9606) | Process |
| GO:2000059 | involved_in negative regulation of ubiquitin-dependent protein catabolic process | 1 | IDA | Homo_sapiens(9606) | Process |
| GO:2001235 | involved_in positive regulation of apoptotic signaling pathway | 2 | IBA,IDA | Homo_sapiens(9606) | Process |