Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzyme
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000197417 Gene ID 23729 Accession 1492
Symbol SHPK Alias SHK;CARKL Full Name sedoheptulokinase
Status Confidence Length 28011 bases Strand Minus strand
Position 17 : 3608240 - 3636250 RNA binding domain N.A.
Summary The protein encoded by this gene has weak homology to several carbohydrate kinases, a class of proteins involved in the phosphorylation of sugars as they enter a cell, inhibiting return across the cell membrane. Sequence variation between this novel gene and known carbohydrate kinases suggests the possibility of a different substrate, cofactor or changes in kinetic properties distinguishing it from other carbohydrate kinases. The gene resides in a region commonly deleted in cystinosis patients, suggesting a role as a modifier for the cystinosis phenotype. The genomic region is also rich in Alu repetitive sequences, frequently involved in chromosomal rearrangements. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SHPK-201 ENST00000225519 3788 478aa ENSP00000225519

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005524enables ATP binding1IEAHomo_sapiens(9606)Function
GO:0005737located_in cytoplasm1ISSHomo_sapiens(9606)Component
GO:0005829is_active_in cytosol2IBA,TASHomo_sapiens(9606)Component
GO:0005975involved_in carbohydrate metabolic process1IDAHomo_sapiens(9606)Process
GO:0006071involved_in glycerol metabolic process1IBAHomo_sapiens(9606)Process
GO:0006098involved_in pentose-phosphate shunt1TASHomo_sapiens(9606)Process
GO:0009052involved_in pentose-phosphate shunt, non-oxidative branch1ISSHomo_sapiens(9606)Process
GO:0016310involved_in phosphorylation2IBA,IDAHomo_sapiens(9606)Process
GO:0035963involved_in cellular response to interleukin-131ISSHomo_sapiens(9606)Process
GO:0043030involved_in regulation of macrophage activation1ISSHomo_sapiens(9606)Process
GO:0050277enables sedoheptulokinase activity3IBA,IDA,TASHomo_sapiens(9606)Function
GO:0050727involved_in regulation of inflammatory response1ISSHomo_sapiens(9606)Process
GO:0071222involved_in cellular response to lipopolysaccharide2IBA,IDAHomo_sapiens(9606)Process
GO:0071353involved_in cellular response to interleukin-41ISSHomo_sapiens(9606)Process

Expression