RBP Type
Non-canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
Metabolic enzyme
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000197417 Gene ID
23729
Accession
1492
Symbol
SHPK
Alias
SHK;CARKL
Full Name
sedoheptulokinase
Status
Confidence
Length
28011 bases
Strand
Minus strand
Position
17 : 3608240 - 3636250
RNA binding domain
N.A.
Summary
The protein encoded by this gene has weak homology to several carbohydrate kinases, a class of proteins involved in the phosphorylation of sugars as they enter a cell, inhibiting return across the cell membrane. Sequence variation between this novel gene and known carbohydrate kinases suggests the possibility of a different substrate, cofactor or changes in kinetic properties distinguishing it from other carbohydrate kinases. The gene resides in a region commonly deleted in cystinosis patients, suggesting a role as a modifier for the cystinosis phenotype. The genomic region is also rich in Alu repetitive sequences, frequently involved in chromosomal rearrangements. [provided by RefSeq, Jul 2008]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
SHPK-201
ENST00000225519
3788
478aa
ENSP00000225519
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005524 enables ATP binding 1 IEA Homo_sapiens(9606) Function GO:0005737 located_in cytoplasm 1 ISS Homo_sapiens(9606) Component GO:0005829 is_active_in cytosol 2 IBA,TAS Homo_sapiens(9606) Component GO:0005975 involved_in carbohydrate metabolic process 1 IDA Homo_sapiens(9606) Process GO:0006071 involved_in glycerol metabolic process 1 IBA Homo_sapiens(9606) Process GO:0006098 involved_in pentose-phosphate shunt 1 TAS Homo_sapiens(9606) Process GO:0009052 involved_in pentose-phosphate shunt, non-oxidative branch 1 ISS Homo_sapiens(9606) Process GO:0016310 involved_in phosphorylation 2 IBA,IDA Homo_sapiens(9606) Process GO:0035963 involved_in cellular response to interleukin-13 1 ISS Homo_sapiens(9606) Process GO:0043030 involved_in regulation of macrophage activation 1 ISS Homo_sapiens(9606) Process GO:0050277 enables sedoheptulokinase activity 3 IBA,IDA,TAS Homo_sapiens(9606) Function GO:0050727 involved_in regulation of inflammatory response 1 ISS Homo_sapiens(9606) Process GO:0071222 involved_in cellular response to lipopolysaccharide 2 IBA,IDA Homo_sapiens(9606) Process GO:0071353 involved_in cellular response to interleukin-4 1 ISS Homo_sapiens(9606) Process
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