Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzyme
Localizations Stress granucle
BulkPerturb-seq

Description

Ensembl ID ENSG00000196313 Gene ID 9883 Accession 19702
Symbol POM121 Alias P145;POM121A Full Name POM121 transmembrane nucleoporin
Status Confidence Length 72092 bases Strand Plus strand
Position 7 : 72879349 - 72951440 RNA binding domain N.A.
Summary This gene encodes a transmembrane protein that localizes to the inner nuclear membrane and forms a core component of the nuclear pore complex, which mediates transport to and from the nucleus. The encoded protein may anchor this complex to the nuclear envelope. There are multiple related genes and pseudogenes for this gene on chromosomes 5, 7, 15, and 22. Alternatively spliced transcript variants encoding different isoforms have been observed. [provided by RefSeq, Jul 2013]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
35229468 Partners in crime: Proteins implicated in RNA repeat expansion diseases. Anna Baud 2022-07-01 Wiley interdisciplinary reviews. RNA

Transcripts

Name Transcript ID bp Protein Translation ID
POM121-203 ENST00000627934 6013 984aa ENSP00000486504
POM121-201 ENST00000395270 7011 999aa ENSP00000378687
POM121-202 ENST00000434423 5842 1249aa ENSP00000405562

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005635located_in nuclear envelope2IDA,TASHomo_sapiens(9606)Component
GO:0005643part_of nuclear pore2IBA,NASHomo_sapiens(9606)Component
GO:0005654located_in nucleoplasm1IDAHomo_sapiens(9606)Component
GO:0005789located_in endoplasmic reticulum membrane1IEAHomo_sapiens(9606)Component
GO:0006405involved_in RNA export from nucleus1IBAHomo_sapiens(9606)Process
GO:0006606involved_in protein import into nucleus1IBAHomo_sapiens(9606)Process
GO:0006913involved_in nucleocytoplasmic transport1NASHomo_sapiens(9606)Process
GO:0008139enables nuclear localization sequence binding1IBAHomo_sapiens(9606)Function
GO:0017056enables structural constituent of nuclear pore1IBAHomo_sapiens(9606)Function
GO:0031965located_in nuclear membrane1IDAHomo_sapiens(9606)Component
GO:0051028involved_in mRNA transport1IEAHomo_sapiens(9606)Process

Expression