Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000185880 Gene ID 140691 Accession 17857
Symbol TRIM69 Alias Trif;HSD34;RNF36;HSD-34 Full Name tripartite motif containing 69
Status Confidence Length 38842 bases Strand Plus strand
Position 15 : 44728988 - 44767829 RNA binding domain SPRY
Summary This gene encodes a member of the RING-B-box-coiled-coil (RBCC) family and encodes a protein with an N-terminal RING finger motif, a PRY domain and a C-terminal SPRY domain. The mouse ortholog of this gene is specifically expressed in germ cells at the round spermatid stages during spermatogenesis and, when overexpressed, induces apoptosis. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000453077 SPRY PF00622 1.6e-15 1
ENSP00000453332 SPRY PF00622 1.9e-15 1
ENSP00000453549 SPRY PF00622 2.1e-15 1
ENSP00000342922 SPRY PF00622 2.7e-15 1
ENSP00000332284 SPRY PF00622 4.9e-15 1
ENSP00000453177 SPRY PF00622 4.9e-15 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
TRIM69-206 ENST00000559390 2486 500aa ENSP00000453177
TRIM69-207 ENST00000560141 3190 No protein -
TRIM69-209 ENST00000560554 655 No protein -
TRIM69-205 ENST00000559315 560 No protein -
TRIM69-212 ENST00000561237 561 No protein -
TRIM69-201 ENST00000329464 1735 500aa ENSP00000332284
TRIM69-204 ENST00000558329 1211 279aa ENSP00000453332
TRIM69-208 ENST00000560442 1262 296aa ENSP00000453549
TRIM69-210 ENST00000561043 1017 263aa ENSP00000453077
TRIM69-202 ENST00000338264 1222 341aa ENSP00000342922
TRIM69-203 ENST00000558173 5691 No protein -
TRIM69-211 ENST00000561170 391 130aa ENSP00000452739

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
28900monocyte chemoattractant protein 1 (66-77)3.3200000E-005-
50500Child Development Disorders, Pervasive1.1235100E-005-
50505Child Development Disorders, Pervasive2.0652500E-006-
50512Child Development Disorders, Pervasive3.4958900E-006-
51234Child Development Disorders, Pervasive4.2147100E-005-
51237Child Development Disorders, Pervasive1.2090600E-005-
51238Child Development Disorders, Pervasive4.2577500E-005-
51239Child Development Disorders, Pervasive2.6268800E-005-
51243Child Development Disorders, Pervasive3.7678800E-005-
51244Child Development Disorders, Pervasive2.8884900E-006-
51248Child Development Disorders, Pervasive4.4338900E-006-

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0004842enables ubiquitin-protein transferase activity1IDAHomo_sapiens(9606)Function
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005634located_in nucleus1IDAHomo_sapiens(9606)Component
GO:0005737is_active_in cytoplasm2IBA,IDAHomo_sapiens(9606)Component
GO:0005829located_in cytosol1TASHomo_sapiens(9606)Component
GO:0006915involved_in apoptotic process1IEAHomo_sapiens(9606)Process
GO:0016567involved_in protein ubiquitination2IBA,IEAHomo_sapiens(9606)Process
GO:0016607located_in nuclear speck1IDAHomo_sapiens(9606)Component
GO:0046872enables metal ion binding1IEAHomo_sapiens(9606)Function
GO:0061630enables ubiquitin protein ligase activity1IBAHomo_sapiens(9606)Function

Expression