RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
E3 ligase
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000185880 Gene ID
140691
Accession
17857
Symbol
TRIM69
Alias
Trif;HSD34;RNF36;HSD-34
Full Name
tripartite motif containing 69
Status
Confidence
Length
38842 bases
Strand
Plus strand
Position
15 : 44728988 - 44767829
RNA binding domain
SPRY
Summary
This gene encodes a member of the RING-B-box-coiled-coil (RBCC) family and encodes a protein with an N-terminal RING finger motif, a PRY domain and a C-terminal SPRY domain. The mouse ortholog of this gene is specifically expressed in germ cells at the round spermatid stages during spermatogenesis and, when overexpressed, induces apoptosis. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000453077
SPRY
PF00622
1.6e-15
1
ENSP00000453332
SPRY
PF00622
1.9e-15
1
ENSP00000453549
SPRY
PF00622
2.1e-15
1
ENSP00000342922
SPRY
PF00622
2.7e-15
1
ENSP00000332284
SPRY
PF00622
4.9e-15
1
ENSP00000453177
SPRY
PF00622
4.9e-15
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
TRIM69-206
ENST00000559390
2486
500aa
ENSP00000453177
TRIM69-207
ENST00000560141
3190
No protein
-
TRIM69-209
ENST00000560554
655
No protein
-
TRIM69-205
ENST00000559315
560
No protein
-
TRIM69-212
ENST00000561237
561
No protein
-
TRIM69-201
ENST00000329464
1735
500aa
ENSP00000332284
TRIM69-204
ENST00000558329
1211
279aa
ENSP00000453332
TRIM69-208
ENST00000560442
1262
296aa
ENSP00000453549
TRIM69-210
ENST00000561043
1017
263aa
ENSP00000453077
TRIM69-202
ENST00000338264
1222
341aa
ENSP00000342922
TRIM69-203
ENST00000558173
5691
No protein
-
TRIM69-211
ENST00000561170
391
130aa
ENSP00000452739
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
28900 monocyte chemoattractant protein 1 (66-77) 3.3200000E-005 - 50500 Child Development Disorders, Pervasive 1.1235100E-005 - 50505 Child Development Disorders, Pervasive 2.0652500E-006 - 50512 Child Development Disorders, Pervasive 3.4958900E-006 - 51234 Child Development Disorders, Pervasive 4.2147100E-005 - 51237 Child Development Disorders, Pervasive 1.2090600E-005 - 51238 Child Development Disorders, Pervasive 4.2577500E-005 - 51239 Child Development Disorders, Pervasive 2.6268800E-005 - 51243 Child Development Disorders, Pervasive 3.7678800E-005 - 51244 Child Development Disorders, Pervasive 2.8884900E-006 - 51248 Child Development Disorders, Pervasive 4.4338900E-006 -
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0004842 enables ubiquitin-protein transferase activity 1 IDA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 located_in nucleus 1 IDA Homo_sapiens(9606) Component GO:0005737 is_active_in cytoplasm 2 IBA,IDA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 1 TAS Homo_sapiens(9606) Component GO:0006915 involved_in apoptotic process 1 IEA Homo_sapiens(9606) Process GO:0016567 involved_in protein ubiquitination 2 IBA,IEA Homo_sapiens(9606) Process GO:0016607 located_in nuclear speck 1 IDA Homo_sapiens(9606) Component GO:0046872 enables metal ion binding 1 IEA Homo_sapiens(9606) Function GO:0061630 enables ubiquitin protein ligase activity 1 IBA Homo_sapiens(9606) Function
Copyright © 2023, Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.