RBPWorld - a comprehensive database of RNA Binding Proteins

Functions and Diseases

RBP Type	Non-canonical_RBPs
Diseases	Cancer
Drug	N.A.
Main interacting RNAs	mRNA
Moonlighting functions	N.A.
Localizations	Stress granucle
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000179134	Gene ID	55095	Accession	25492
Symbol	SAMD4B	Alias	SMGB;Smaug2	Full Name	sterile alpha motif domain containing 4B
Status	Confidence	Length	43290 bases	Strand	Plus strand
Position	19 : 39342421 - 39385710	RNA binding domain	N.A.
Summary	Enables RNA binding activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within cerebellar neuron development. Located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]

Protein	Domain	Pfam ID	E-value	Domain number
No data available in table

RNA binding proteomes (RBPomes)

Show entries

Search:

Pubmed ID	Full Name	Cell	Author	Time	Doi
22681889	RIC_PMID22681889_Hs_HEK293	HEK293	Alexander G Baltz	2012 Jun 8	doi: 10.1016/j.molcel.2012.05.021
26632259	RIC_PMID26632259._Hs_HuH7	HuH7	Benedikt M Beckmann	2015 Dec 3	doi: 10.1038/ncomms10127.
30528433	XRNAX_PMID30528433_Hs_HEK293	HEK293	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30528433	XRNAX_PMID30528433_Hs_HeLa	HeLa	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30528433	XRNAX_PMID30528433_Hs_MCF7	MCF7	Jakob Trendel	2019 Jan 10	doi: 10.1016/j.cell.2018.11.004.?Epub 2018 Dec 6
30824702	PtexRIC_PMID30824702_293T_human	293T	Erika C Urdaneta	2019 Mar 1	doi: 10.1038/s41467-019-08942-3
33235359	RIC_PMID33235359_humanRIC.superset.2021		Fatima Gebauer	2021 Mar	doi: 10.1038/s41576-020-00302-y
33693821	PP.enrichment.RIC_PMID33693821_Hela_human	Hela	Zheng Zhang	2021 Jun 21	doi: 10.1093/nar/gkab156

Showing 1 to 8 of 8 entries

Previous1Next

Literatures on RNA binding capacity

Show entries

Search:

Pubmed ID	Title	Author	Time	Journal
36732864	RNA binding protein SAMD4: current knowledge and future perspectives.	Xin-Ya Wang	2023-02-02	Cell & bioscience

Showing 1 to 1 of 1 entries

Previous1Next

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
SAMD4B-201	ENST00000314471	4519	694aa	ENSP00000317224
SAMD4B-202	ENST00000594204	626	No protein	-
SAMD4B-203	ENST00000595476	710	No protein	-
SAMD4B-204	ENST00000596271	578	No protein	-
SAMD4B-205	ENST00000596319	604	No protein	-
SAMD4B-206	ENST00000596368	1176	325aa	ENSP00000471509
SAMD4B-207	ENST00000598605	555	94aa	ENSP00000468891
SAMD4B-208	ENST00000598913	2877	692aa	ENSP00000470237
SAMD4B-209	ENST00000599712	925	219aa	ENSP00000469620
SAMD4B-210	ENST00000600018	144	48aa	ENSP00000470821

Showing 1 to 10 of 12 entries

Previous1 2Next

Gene Model

Click here to download ENSG00000179134's gene model file

Phenotypes

Show entries

Search:

ensgID	Trait	pValue	Pubmed ID
71570	Motor Activity	6E-6	23251661

Showing 1 to 1 of 1 entries

Previous1Next

GWAS

Show entries

Search:

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
ENSG00000179134	rs562638	19	39359149	Obesity-related traits	23251661	0.02	EFO_0003940
ENSG00000179134	rs140996761	19	39383218	Interleukin-16 levels	27989323	0.2986	EFO_0008173

Showing 1 to 2 of 2 entries

Previous1Next

Protein-Protein Interaction (PPI)

Click here to download ENSG00000179134's PPI file

Paralogs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000179134	homo_sapiens	ENSP00000452535	72.9805	61.9777	homo_sapiens	ENSP00000484229	75.5043	64.121

Showing 1 to 1 of 1 entries

Previous1Next

Orthologs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000179134	homo_sapiens	ENSP00000484229	96.5418	96.1095	nomascus_leucogenys	ENSNLEP00000017582	98.6745	98.2327
ENSG00000179134	homo_sapiens	ENSP00000484229	100	100	pan_paniscus	ENSPPAP00000039601	100	100
ENSG00000179134	homo_sapiens	ENSP00000484229	99.1354	98.8473	pongo_abelii	ENSPPYP00000011153	98.4263	98.1402
ENSG00000179134	homo_sapiens	ENSP00000484229	100	100	pan_troglodytes	ENSPTRP00000067776	100	100
ENSG00000179134	homo_sapiens	ENSP00000484229	82.2767	80.8357	gorilla_gorilla	ENSGGOP00000017441	88.2535	86.7079
ENSG00000179134	homo_sapiens	ENSP00000484229	88.1844	83.7176	ornithorhynchus_anatinus	ENSOANP00000053460	83.8356	79.589
ENSG00000179134	homo_sapiens	ENSP00000484229	94.2363	91.6427	sarcophilus_harrisii	ENSSHAP00000039388	95.0581	92.4419
ENSG00000179134	homo_sapiens	ENSP00000484229	83.5735	80.8357	notamacropus_eugenii	ENSMEUP00000009359	84.425	81.6594
ENSG00000179134	homo_sapiens	ENSP00000484229	93.2277	92.219	dasypus_novemcinctus	ENSDNOP00000032378	93.7681	92.7536
ENSG00000179134	homo_sapiens	ENSP00000484229	83.4294	81.7003	erinaceus_europaeus	ENSEEUP00000010240	89.3519	87.5

Showing 1 to 10 of 203 entries

Previous1 2 3 4 5…21Next

Gene Ontology

Show entries

Search:

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000289	involved_in nuclear-transcribed mRNA poly(A) tail shortening	1	IBA	Homo_sapiens(9606)	Process
GO:0000932	is_active_in P-body	1	IBA	Homo_sapiens(9606)	Component
GO:0003723	enables RNA binding	1	HDA	Homo_sapiens(9606)	Function
GO:0003729	enables mRNA binding	1	IBA	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0005634	located_in nucleus	1	IEA	Homo_sapiens(9606)	Component
GO:0005829	located_in cytosol	1	IDA	Homo_sapiens(9606)	Component
GO:0030371	enables translation repressor activity	1	IEA	Homo_sapiens(9606)	Function

Showing 1 to 8 of 8 entries

Previous1Next

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression