RBP Type
Canonical_RBPs
Diseases
Disease
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
Metabolic enzyme E3 ligase
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000177565 Gene ID
79718
Accession
29529
Symbol
TBL1XR1
Alias
C21;DC42;IRA1;MRD41;TBLR1
Full Name
TBL1X/Y related 1
Status
Confidence
Length
208657 bases
Strand
Minus strand
Position
3 : 177019344 - 177228000
RNA binding domain
eIF2A
Summary
This gene is a member of the WD40 repeat-containing gene family and shares sequence similarity with transducin (beta)-like 1X-linked (TBL1X). The protein encoded by this gene is thought to be a component of both nuclear receptor corepressor (N-CoR) and histone deacetylase 3 (HDAC 3) complexes, and is required for transcriptional activation by a variety of transcription factors. Mutations in these gene have been associated with some autism spectrum disorders, and one finding suggests that haploinsufficiency of this gene may be a cause of intellectual disability with dysmorphism. Mutations in this gene as well as recurrent translocations involving this gene have also been observed in some tumors. [provided by RefSeq, Mar 2016]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000490514
eIF2A
PF08662
4.8e-06
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
TBL1XR1-227
ENST00000636864
6888
No protein
-
TBL1XR1-214
ENST00000457928
8182
514aa
ENSP00000413251
TBL1XR1-208
ENST00000430069
7948
514aa
ENSP00000405574
TBL1XR1-237
ENST00000704383
8082
514aa
ENSP00000515885
TBL1XR1-232
ENST00000637659
3105
271aa
ENSP00000490514
TBL1XR1-215
ENST00000474363
6229
No protein
-
TBL1XR1-236
ENST00000673974
6502
514aa
ENSP00000501274
TBL1XR1-221
ENST00000631253
4186
474aa
ENSP00000486324
TBL1XR1-209
ENST00000431421
3814
427aa
ENSP00000402402
TBL1XR1-201
ENST00000352800
2454
514aa
ENSP00000263964
TBL1XR1-203
ENST00000422066
2619
514aa
ENSP00000398477
TBL1XR1-204
ENST00000422442
2535
514aa
ENSP00000387849
TBL1XR1-238
ENST00000704384
1991
514aa
ENSP00000515886
TBL1XR1-217
ENST00000626758
355
67aa
ENSP00000486622
TBL1XR1-239
ENST00000704385
1902
514aa
ENSP00000515887
TBL1XR1-235
ENST00000638074
100
No protein
-
TBL1XR1-225
ENST00000636348
100
No protein
-
TBL1XR1-222
ENST00000635757
100
No protein
-
TBL1XR1-233
ENST00000637681
100
No protein
-
TBL1XR1-207
ENST00000428970
575
75aa
ENSP00000391559
TBL1XR1-205
ENST00000424913
592
73aa
ENSP00000404863
TBL1XR1-211
ENST00000437738
565
145aa
ENSP00000392180
TBL1XR1-223
ENST00000635794
768
131aa
ENSP00000490246
TBL1XR1-219
ENST00000630796
656
122aa
ENSP00000486235
TBL1XR1-213
ENST00000450267
588
120aa
ENSP00000406297
TBL1XR1-220
ENST00000630833
567
105aa
ENSP00000486082
TBL1XR1-210
ENST00000431674
559
96aa
ENSP00000397450
TBL1XR1-212
ENST00000443315
580
81aa
ENSP00000396120
TBL1XR1-218
ENST00000627825
312
No protein
-
TBL1XR1-206
ENST00000427349
554
61aa
ENSP00000401044
TBL1XR1-202
ENST00000413084
592
33aa
ENSP00000415506
TBL1XR1-230
ENST00000637137
107
No protein
-
TBL1XR1-216
ENST00000491623
582
No protein
-
TBL1XR1-231
ENST00000637544
214
No protein
-
TBL1XR1-226
ENST00000636478
100
No protein
-
TBL1XR1-234
ENST00000637755
98
No protein
-
TBL1XR1-224
ENST00000636187
171
No protein
-
TBL1XR1-228
ENST00000636912
100
No protein
-
TBL1XR1-229
ENST00000637123
138
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000118 part_of histone deacetylase complex 2 IBA,IDA Homo_sapiens(9606) Component GO:0000122 involved_in negative regulation of transcription by RNA polymerase II 1 IDA Homo_sapiens(9606) Process GO:0000976 enables transcription cis-regulatory region binding 2 IDA,ISS Homo_sapiens(9606) Function GO:0001835 involved_in blastocyst hatching 1 IEA Homo_sapiens(9606) Process GO:0002021 involved_in response to dietary excess 1 IEA Homo_sapiens(9606) Process GO:0003714 enables transcription corepressor activity 3 IBA,IDA,IGI Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 located_in nucleus 1 IDA Homo_sapiens(9606) Component GO:0005654 located_in nucleoplasm 1 TAS Homo_sapiens(9606) Component GO:0006325 involved_in chromatin organization 1 IEA Homo_sapiens(9606) Process GO:0006357 involved_in regulation of transcription by RNA polymerase II 1 IBA Homo_sapiens(9606) Process GO:0008013 enables beta-catenin binding 1 IPI Homo_sapiens(9606) Function GO:0016042 involved_in lipid catabolic process 1 IEA Homo_sapiens(9606) Process GO:0017053 part_of transcription repressor complex 1 IDA Homo_sapiens(9606) Component GO:0035264 involved_in multicellular organism growth 1 IEA Homo_sapiens(9606) Process GO:0042393 enables histone binding 1 IDA Homo_sapiens(9606) Function GO:0043161 involved_in proteasome-mediated ubiquitin-dependent protein catabolic process 1 ISS Homo_sapiens(9606) Process GO:0045893 involved_in positive regulation of DNA-templated transcription 1 IDA Homo_sapiens(9606) Process GO:0045944 involved_in positive regulation of transcription by RNA polymerase II 1 IDA Homo_sapiens(9606) Process GO:0050872 involved_in white fat cell differentiation 1 IEA Homo_sapiens(9606) Process GO:0060613 involved_in fat pad development 1 IEA Homo_sapiens(9606) Process GO:0072686 located_in mitotic spindle 1 IDA Homo_sapiens(9606) Component GO:0090207 involved_in regulation of triglyceride metabolic process 1 IEA Homo_sapiens(9606) Process GO:0090263 involved_in positive regulation of canonical Wnt signaling pathway 1 IMP Homo_sapiens(9606) Process
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