Functions and Diseases

RBP Type Canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000175093 Gene ID 92369 Accession 30630
Symbol SPSB4 Alias SSB4;SSB-4 Full Name splA/ryanodine receptor domain and SOCS box containing 4
Status Confidence Length 97265 bases Strand Plus strand
Position 3 : 141051347 - 141148611 RNA binding domain SPRY
Summary Enables ubiquitin ligase-substrate adaptor activity. Involved in cellular protein metabolic process; positive regulation of protein polyubiquitination; and regulation of circadian rhythm. Located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000311609 SPRY PF00622 3.3e-18 1
ENSP00000422034 SPRY PF00622 1.2e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SPSB4-201 ENST00000310546 2963 273aa ENSP00000311609
SPSB4-203 ENST00000508126 1752 90aa ENSP00000422034
SPSB4-204 ENST00000508828 537 No protein -
SPSB4-202 ENST00000507895 576 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID
8467Atrial Fibrillation5.42076881911287E-717903304
8481Atrial Fibrillation1.3375363234802E-617903304
27970Diabetes Mellitus4.5830000E-005-
34914Platelet Function Tests6.9500000E-006-
35824Platelet Function Tests1.5343000E-005-
35928Platelet Function Tests1.1960400E-005-
35930Platelet Function Tests1.2910000E-005-
35947Platelet Function Tests4.1400000E-006-
36016Platelet Function Tests7.2800000E-006-
36018Platelet Function Tests7.8900000E-006-
36038Platelet Function Tests2.1000000E-006-
36126Platelet Function Tests1.1960400E-005-
36128Platelet Function Tests1.2910000E-005-
36145Platelet Function Tests4.1400000E-006-
36709Platelet Function Tests9.4500000E-006-
72805Stroke6E-723041239
78286Depressive Disorder3E-727622933
78287Citalopram3E-727622933
78288Mood Disorders3E-727622933
95143Stroke7E-724262325

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005829located_in cytosol2IDA,TASHomo_sapiens(9606)Component
GO:0006511involved_in ubiquitin-dependent protein catabolic process2IDA,IMPHomo_sapiens(9606)Process
GO:0016567involved_in protein ubiquitination2IDA,IEAHomo_sapiens(9606)Process
GO:0019005part_of SCF ubiquitin ligase complex1IBAHomo_sapiens(9606)Component
GO:0035556involved_in intracellular signal transduction1IEAHomo_sapiens(9606)Process
GO:0042752involved_in regulation of circadian rhythm1IMPHomo_sapiens(9606)Process
GO:0043161involved_in proteasome-mediated ubiquitin-dependent protein catabolic process1IBAHomo_sapiens(9606)Process
GO:0048511involved_in rhythmic process1IEAHomo_sapiens(9606)Process
GO:1902916involved_in positive regulation of protein polyubiquitination1IDAHomo_sapiens(9606)Process
GO:1990756enables ubiquitin ligase-substrate adaptor activity1IPIHomo_sapiens(9606)Function

Expression