RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
E3 ligase
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000175093 Gene ID
92369
Accession
30630
Symbol
SPSB4
Alias
SSB4;SSB-4
Full Name
splA/ryanodine receptor domain and SOCS box containing 4
Status
Confidence
Length
97265 bases
Strand
Plus strand
Position
3 : 141051347 - 141148611
RNA binding domain
SPRY
Summary
Enables ubiquitin ligase-substrate adaptor activity. Involved in cellular protein metabolic process; positive regulation of protein polyubiquitination; and regulation of circadian rhythm. Located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000311609
SPRY
PF00622
3.3e-18
1
ENSP00000422034
SPRY
PF00622
1.2e-09
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
SPSB4-201
ENST00000310546
2963
273aa
ENSP00000311609
SPSB4-203
ENST00000508126
1752
90aa
ENSP00000422034
SPSB4-204
ENST00000508828
537
No protein
-
SPSB4-202
ENST00000507895
576
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
8467 Atrial Fibrillation 5.42076881911287E-7 17903304 8481 Atrial Fibrillation 1.3375363234802E-6 17903304 27970 Diabetes Mellitus 4.5830000E-005 - 34914 Platelet Function Tests 6.9500000E-006 - 35824 Platelet Function Tests 1.5343000E-005 - 35928 Platelet Function Tests 1.1960400E-005 - 35930 Platelet Function Tests 1.2910000E-005 - 35947 Platelet Function Tests 4.1400000E-006 - 36016 Platelet Function Tests 7.2800000E-006 - 36018 Platelet Function Tests 7.8900000E-006 - 36038 Platelet Function Tests 2.1000000E-006 - 36126 Platelet Function Tests 1.1960400E-005 - 36128 Platelet Function Tests 1.2910000E-005 - 36145 Platelet Function Tests 4.1400000E-006 - 36709 Platelet Function Tests 9.4500000E-006 - 72805 Stroke 6E-7 23041239 78286 Depressive Disorder 3E-7 27622933 78287 Citalopram 3E-7 27622933 78288 Mood Disorders 3E-7 27622933 95143 Stroke 7E-7 24262325
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005829 located_in cytosol 2 IDA,TAS Homo_sapiens(9606) Component GO:0006511 involved_in ubiquitin-dependent protein catabolic process 2 IDA,IMP Homo_sapiens(9606) Process GO:0016567 involved_in protein ubiquitination 2 IDA,IEA Homo_sapiens(9606) Process GO:0019005 part_of SCF ubiquitin ligase complex 1 IBA Homo_sapiens(9606) Component GO:0035556 involved_in intracellular signal transduction 1 IEA Homo_sapiens(9606) Process GO:0042752 involved_in regulation of circadian rhythm 1 IMP Homo_sapiens(9606) Process GO:0043161 involved_in proteasome-mediated ubiquitin-dependent protein catabolic process 1 IBA Homo_sapiens(9606) Process GO:0048511 involved_in rhythmic process 1 IEA Homo_sapiens(9606) Process GO:1902916 involved_in positive regulation of protein polyubiquitination 1 IDA Homo_sapiens(9606) Process GO:1990756 enables ubiquitin ligase-substrate adaptor activity 1 IPI Homo_sapiens(9606) Function
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