RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
rRNA
Moonlighting functions
N.A.
Localizations
N.A.
BulkPerturb-seq
N.A.
Ensembl ID ENSG00000171861 Gene ID
55178
Accession
18485
Symbol
MRM3
Alias
RMTL1;RNMTL1
Full Name
mitochondrial rRNA methyltransferase 3
Status
Confidence
Length
10157 bases
Strand
Plus strand
Position
17 : 782353 - 792509
RNA binding domain
SpoU_methylase
Summary
Efficient translation of mitochondrial-derived transcripts requires proper assembly of the large subunit of the mitochondrial ribosome. Central to the biogenesis of this large subunit is the A-loop of mitochondrial 16S rRNA, which is modified by three rRNA methyltransferases located near mtDNA nucleoids. The protein encoded by this gene methylates G(1370) of 16S rRNA, and this modification is necessary for proper ribosomal large subnit assembly. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000306080
SpoU_methylase
PF00588
5.8e-21
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
MRM3-201
ENST00000304478
1729
420aa
ENSP00000306080
MRM3-204
ENST00000574916
770
No protein
-
MRM3-203
ENST00000574509
727
110aa
ENSP00000458328
MRM3-202
ENST00000571157
572
177aa
ENSP00000460957
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
75296 Diabetes Mellitus, Type 2 4E-6 23300278
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000171861 homo_sapiens ENSP00000040877 11.351 6.29241 homo_sapiens ENSP00000306080 43.8095 24.2857 ENSG00000171861 homo_sapiens ENSP00000481559 31.4448 15.864 homo_sapiens ENSP00000306080 26.4286 13.3333
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000171861 homo_sapiens ENSP00000306080 97.8571 95.9524 nomascus_leucogenys ENSNLEP00000025830 97.8571 95.9524 ENSG00000171861 homo_sapiens ENSP00000306080 100 99.5238 pan_paniscus ENSPPAP00000031099 100 99.5238 ENSG00000171861 homo_sapiens ENSP00000306080 98.5714 96.9048 pongo_abelii ENSPPYP00000008745 98.5714 96.9048 ENSG00000171861 homo_sapiens ENSP00000306080 100 99.7619 pan_troglodytes ENSPTRP00000014527 100 99.7619 ENSG00000171861 homo_sapiens ENSP00000306080 100 100 gorilla_gorilla ENSGGOP00000015137 100 100 ENSG00000171861 homo_sapiens ENSP00000306080 47.619 28.0952 ornithorhynchus_anatinus ENSOANP00000034789 13.0719 7.71242 ENSG00000171861 homo_sapiens ENSP00000306080 79.7619 67.619 sarcophilus_harrisii ENSSHAP00000013599 73.9514 62.6932 ENSG00000171861 homo_sapiens ENSP00000306080 65.2381 58.3333 notamacropus_eugenii ENSMEUP00000011131 91.0299 81.3953 ENSG00000171861 homo_sapiens ENSP00000306080 89.7619 82.381 choloepus_hoffmanni ENSCHOP00000010075 89.9761 82.5776 ENSG00000171861 homo_sapiens ENSP00000306080 91.4286 82.381 dasypus_novemcinctus ENSDNOP00000003311 91.6468 82.5776 ENSG00000171861 homo_sapiens ENSP00000306080 56.9048 49.2857 erinaceus_europaeus ENSEEUP00000000558 60.0503 52.0101 ENSG00000171861 homo_sapiens ENSP00000306080 58.5714 53.0952 echinops_telfairi ENSETEP00000014502 58.4323 52.9691 ENSG00000171861 homo_sapiens ENSP00000306080 80.9524 74.0476 callithrix_jacchus ENSCJAP00000091428 67.4603 61.7063 ENSG00000171861 homo_sapiens ENSP00000306080 97.381 95 cercocebus_atys ENSCATP00000016300 97.381 95 ENSG00000171861 homo_sapiens ENSP00000306080 96.6667 94.0476 macaca_fascicularis ENSMFAP00000028025 96.6667 94.0476 ENSG00000171861 homo_sapiens ENSP00000306080 96.4286 93.5714 macaca_mulatta ENSMMUP00000077046 96.4286 93.5714 ENSG00000171861 homo_sapiens ENSP00000306080 96.4286 93.8095 macaca_nemestrina ENSMNEP00000017800 96.4286 93.8095 ENSG00000171861 homo_sapiens ENSP00000306080 96.6667 94.5238 papio_anubis ENSPANP00000019465 96.4371 94.2993 ENSG00000171861 homo_sapiens ENSP00000306080 96.4286 94.5238 mandrillus_leucophaeus ENSMLEP00000020194 96.4286 94.5238 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 81.9048 tursiops_truncatus ENSTTRP00000003610 89.8345 81.3239 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 82.619 vulpes_vulpes ENSVVUP00000029517 80.1688 73.2067 ENSG00000171861 homo_sapiens ENSP00000306080 89.5238 80.7143 mus_spretus MGP_SPRETEiJ_P0029743 89.9522 81.1005 ENSG00000171861 homo_sapiens ENSP00000306080 90.9524 84.7619 equus_asinus ENSEASP00005043348 90.9524 84.7619 ENSG00000171861 homo_sapiens ENSP00000306080 91.4286 83.0952 capra_hircus ENSCHIP00000030510 91.2114 82.8979 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 82.619 loxodonta_africana ENSLAFP00000013977 90.0709 82.0331 ENSG00000171861 homo_sapiens ENSP00000306080 89.2857 82.1429 panthera_leo ENSPLOP00000022946 77.6398 71.4286 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 83.8095 ailuropoda_melanoleuca ENSAMEP00000008781 90.0709 83.2151 ENSG00000171861 homo_sapiens ENSP00000306080 85.9524 78.0952 oryctolagus_cuniculus ENSOCUP00000001912 87.4092 79.4189 ENSG00000171861 homo_sapiens ENSP00000306080 90.2381 84.0476 equus_caballus ENSECAP00000021875 85.553 79.684 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 83.8095 canis_lupus_familiaris ENSCAFP00845019077 90.0709 83.2151 ENSG00000171861 homo_sapiens ENSP00000306080 89.2857 82.381 panthera_pardus ENSPPRP00000015504 89.0736 82.1853 ENSG00000171861 homo_sapiens ENSP00000306080 90.9524 83.8095 marmota_marmota_marmota ENSMMMP00000027640 90.9524 83.8095 ENSG00000171861 homo_sapiens ENSP00000306080 89.7619 80.2381 balaenoptera_musculus ENSBMSP00010024623 88.7059 79.2941 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 84.5238 cavia_porcellus ENSCPOP00000015960 89.6471 83.5294 ENSG00000171861 homo_sapiens ENSP00000306080 89.5238 83.0952 felis_catus ENSFCAP00000001552 77.8468 72.2567 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 83.0952 ursus_americanus ENSUAMP00000017204 90.0709 82.5059 ENSG00000171861 homo_sapiens ENSP00000306080 79.7619 69.7619 monodelphis_domestica ENSMODP00000012561 74.7768 65.4018 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 82.381 bison_bison_bison ENSBBBP00000012988 91.7874 83.5749 ENSG00000171861 homo_sapiens ENSP00000306080 91.1905 82.619 monodon_monoceros ENSMMNP00015029372 90.5437 82.0331 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 82.1429 sus_scrofa ENSSSCP00000018865 90.0474 81.7536 ENSG00000171861 homo_sapiens ENSP00000306080 92.1429 85.9524 microcebus_murinus ENSMICP00000037609 92.1429 85.9524 ENSG00000171861 homo_sapiens ENSP00000306080 81.4286 74.7619 octodon_degus ENSODEP00000012713 93.188 85.5586 ENSG00000171861 homo_sapiens ENSP00000306080 87.381 77.8571 jaculus_jaculus ENSJJAP00000024840 88.4337 78.7952 ENSG00000171861 homo_sapiens ENSP00000306080 91.6667 82.619 ovis_aries_rambouillet ENSOARP00020015710 91.0165 82.0331 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 83.3333 ursus_maritimus ENSUMAP00000013646 90.0709 82.7423 ENSG00000171861 homo_sapiens ENSP00000306080 60 53.8095 ochotona_princeps ENSOPRP00000002318 67.9245 60.9164 ENSG00000171861 homo_sapiens ENSP00000306080 91.1905 82.619 delphinapterus_leucas ENSDLEP00000010381 90.5437 82.0331 ENSG00000171861 homo_sapiens ENSP00000306080 90.2381 81.6667 physeter_catodon ENSPCTP00005007567 72.4665 65.5832 ENSG00000171861 homo_sapiens ENSP00000306080 89.0476 81.6667 mus_caroli MGP_CAROLIEiJ_P0028349 89.4737 82.0574 ENSG00000171861 homo_sapiens ENSP00000306080 89.0476 80.7143 mus_musculus ENSMUSP00000042882 89.4737 81.1005 ENSG00000171861 homo_sapiens ENSP00000306080 88.0952 78.5714 dipodomys_ordii ENSDORP00000007086 89.5884 79.9031 ENSG00000171861 homo_sapiens ENSP00000306080 77.8571 70 mustela_putorius_furo ENSMPUP00000013690 89.3443 80.3279 ENSG00000171861 homo_sapiens ENSP00000306080 94.0476 89.2857 aotus_nancymaae ENSANAP00000001682 92.0746 87.4126 ENSG00000171861 homo_sapiens ENSP00000306080 93.3333 88.5714 saimiri_boliviensis_boliviensis ENSSBOP00000026244 93.7799 88.9952 ENSG00000171861 homo_sapiens ENSP00000306080 93.0952 84.0476 vicugna_pacos ENSVPAP00000008721 92.435 83.4515 ENSG00000171861 homo_sapiens ENSP00000306080 97.1429 95 chlorocebus_sabaeus ENSCSAP00000010375 97.1429 95 ENSG00000171861 homo_sapiens ENSP00000306080 90 82.1429 mesocricetus_auratus ENSMAUP00000020945 90.2148 82.3389 ENSG00000171861 homo_sapiens ENSP00000306080 90.9524 81.9048 phocoena_sinus ENSPSNP00000030758 90.3073 81.3239 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 81.4286 camelus_dromedarius ENSCDRP00005019802 82.7887 74.5098 ENSG00000171861 homo_sapiens ENSP00000306080 92.381 85.7143 carlito_syrichta ENSTSYP00000005551 92.1615 85.5107 ENSG00000171861 homo_sapiens ENSP00000306080 88.8095 82.619 panthera_tigris_altaica ENSPTIP00000025627 88.8095 82.619 ENSG00000171861 homo_sapiens ENSP00000306080 89.5238 82.1429 rattus_norvegicus ENSRNOP00000053117 89.9522 82.5359 ENSG00000171861 homo_sapiens ENSP00000306080 92.8571 86.4286 prolemur_simus ENSPSMP00000001325 92.6366 86.2233 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 82.1429 microtus_ochrogaster ENSMOCP00000021364 90.9308 82.3389 ENSG00000171861 homo_sapiens ENSP00000306080 81.6667 73.3333 sorex_araneus ENSSARP00000005596 86.398 77.5819 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 82.619 peromyscus_maniculatus_bairdii ENSPEMP00000026360 90.4762 82.619 ENSG00000171861 homo_sapiens ENSP00000306080 88.8095 79.5238 mus_spicilegus ENSMSIP00000029570 89.2345 79.9043 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 82.8571 cricetulus_griseus_chok1gshd ENSCGRP00001013504 90.9308 83.0549 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 82.619 pteropus_vampyrus ENSPVAP00000011038 90.2613 82.4228 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 82.619 myotis_lucifugus ENSMLUP00000001379 90.7143 82.619 ENSG00000171861 homo_sapiens ENSP00000306080 76.9048 68.8095 vombatus_ursinus ENSVURP00010011059 73.7443 65.9817 ENSG00000171861 homo_sapiens ENSP00000306080 89.7619 82.381 rhinolophus_ferrumequinum ENSRFEP00010015052 90.1914 82.7751 ENSG00000171861 homo_sapiens ENSP00000306080 90.9524 82.8571 neovison_vison ENSNVIP00000009053 90.3073 82.2695 ENSG00000171861 homo_sapiens ENSP00000306080 92.381 84.7619 heterocephalus_glaber_female ENSHGLP00000013353 91.9431 84.3602 ENSG00000171861 homo_sapiens ENSP00000306080 95.7143 93.0952 rhinopithecus_bieti ENSRBIP00000041847 95.4869 92.8741 ENSG00000171861 homo_sapiens ENSP00000306080 90.7143 83.8095 canis_lupus_dingo ENSCAFP00020013634 90.0709 83.2151 ENSG00000171861 homo_sapiens ENSP00000306080 91.6667 84.5238 sciurus_vulgaris ENSSVLP00005017296 91.6667 84.5238 ENSG00000171861 homo_sapiens ENSP00000306080 77.619 68.8095 phascolarctos_cinereus ENSPCIP00000034743 72.6058 64.3653 ENSG00000171861 homo_sapiens ENSP00000306080 88.8095 80.9524 procavia_capensis ENSPCAP00000007496 88.5986 80.7601 ENSG00000171861 homo_sapiens ENSP00000306080 91.1905 85.2381 nannospalax_galili ENSNGAP00000008266 91.1905 85.2381 ENSG00000171861 homo_sapiens ENSP00000306080 90.4762 82.381 bos_grunniens ENSBGRP00000025230 91.7874 83.5749 ENSG00000171861 homo_sapiens ENSP00000306080 91.4286 83.8095 chinchilla_lanigera ENSCLAP00000012431 90.3529 82.8235 ENSG00000171861 homo_sapiens ENSP00000306080 91.1905 82.619 cervus_hanglu_yarkandensis ENSCHYP00000013534 90.9739 82.4228 ENSG00000171861 homo_sapiens ENSP00000306080 92.1429 84.7619 ictidomys_tridecemlineatus ENSSTOP00000014703 92.3628 84.9642 ENSG00000171861 homo_sapiens ENSP00000306080 91.9048 85.7143 otolemur_garnettii ENSOGAP00000001209 91.9048 85.7143 ENSG00000171861 homo_sapiens ENSP00000306080 93.8095 89.0476 cebus_imitator ENSCCAP00000040623 94.2584 89.4737 ENSG00000171861 homo_sapiens ENSP00000306080 92.1429 85.2381 urocitellus_parryii ENSUPAP00010023464 92.3628 85.4415 ENSG00000171861 homo_sapiens ENSP00000306080 92.1429 83.3333 moschus_moschiferus ENSMMSP00000016098 91.7062 82.9384 ENSG00000171861 homo_sapiens ENSP00000306080 95.9524 93.8095 rhinopithecus_roxellana ENSRROP00000036512 93.9394 91.8415 ENSG00000171861 homo_sapiens ENSP00000306080 89.2857 81.4286 mus_pahari MGP_PahariEiJ_P0035090 89.7129 81.8182 ENSG00000171861 homo_sapiens ENSP00000306080 92.381 86.6667 propithecus_coquereli ENSPCOP00000004281 92.1615 86.4608 ENSG00000171861 homo_sapiens ENSP00000306080 26.9048 10.9524 caenorhabditis_elegans T14B4.1.1 9.22449 3.7551 ENSG00000171861 homo_sapiens ENSP00000306080 50.4762 36.6667 petromyzon_marinus ENSPMAP00000001757 61.9883 45.0292 ENSG00000171861 homo_sapiens ENSP00000306080 56.4286 46.9048 callorhinchus_milii ENSCMIP00000022093 67.9083 56.447 ENSG00000171861 homo_sapiens ENSP00000306080 71.1905 56.1905 latimeria_chalumnae ENSLACP00000008085 65.2838 51.5284 ENSG00000171861 homo_sapiens ENSP00000306080 57.1429 41.4286 lepisosteus_oculatus ENSLOCP00000007391 54.4218 39.4558 ENSG00000171861 homo_sapiens ENSP00000306080 65.2381 48.8095 esox_lucius ENSELUP00000040807 58.9247 44.086 ENSG00000171861 homo_sapiens ENSP00000306080 62.8571 46.1905 electrophorus_electricus ENSEEEP00000003295 61.2529 45.0116 ENSG00000171861 homo_sapiens ENSP00000306080 67.381 50.2381 oncorhynchus_kisutch ENSOKIP00005098893 62.7494 46.7849 ENSG00000171861 homo_sapiens ENSP00000306080 67.619 50 oncorhynchus_mykiss ENSOMYP00000087315 60.4255 44.6809 ENSG00000171861 homo_sapiens ENSP00000306080 63.5714 49.0476 salmo_salar ENSSSAP00000044666 61.0984 47.1396 ENSG00000171861 homo_sapiens ENSP00000306080 55.9524 42.381 poecilia_reticulata ENSPREP00000014670 65.8263 49.8599 ENSG00000171861 homo_sapiens ENSP00000306080 71.4286 53.0952 xenopus_tropicalis ENSXETP00000048602 72.2892 53.7349 ENSG00000171861 homo_sapiens ENSP00000306080 61.9048 51.4286 crocodylus_porosus ENSCPRP00005018075 60.1852 50 ENSG00000171861 homo_sapiens ENSP00000306080 58.3333 44.7619 laticauda_laticaudata ENSLLTP00000001398 66.5761 51.087 ENSG00000171861 homo_sapiens ENSP00000306080 38.5714 31.1905 pseudonaja_textilis ENSPTXP00000010907 68.9362 55.7447 ENSG00000171861 homo_sapiens ENSP00000306080 64.2857 51.9048 gallus_gallus ENSGALP00010044701 66.3391 53.5627 ENSG00000171861 homo_sapiens ENSP00000306080 62.381 49.7619 meleagris_gallopavo ENSMGAP00000007052 45.1724 36.0345 ENSG00000171861 homo_sapiens ENSP00000306080 58.8095 47.619 serinus_canaria ENSSCAP00000014332 63.0102 51.0204 ENSG00000171861 homo_sapiens ENSP00000306080 64.7619 54.2857 parus_major ENSPMJP00000027182 66.6667 55.8824 ENSG00000171861 homo_sapiens ENSP00000306080 34.7619 27.8571 naja_naja ENSNNAP00000000552 67.5926 54.1667 ENSG00000171861 homo_sapiens ENSP00000306080 60.4762 49.2857 podarcis_muralis ENSPMRP00000037162 70.5556 57.5 ENSG00000171861 homo_sapiens ENSP00000306080 59.7619 49.0476 geospiza_fortis ENSGFOP00000017176 62.4378 51.2438 ENSG00000171861 homo_sapiens ENSP00000306080 65 54.2857 taeniopygia_guttata ENSTGUP00000007457 62.6147 52.2936 ENSG00000171861 homo_sapiens ENSP00000306080 40.9524 35.7143 pelodiscus_sinensis ENSPSIP00000015976 72.5738 63.2911 ENSG00000171861 homo_sapiens ENSP00000306080 55.7143 46.1905 struthio_camelus_australis ENSSCUP00000008145 65.1811 54.039 ENSG00000171861 homo_sapiens ENSP00000306080 64.7619 51.6667 anser_brachyrhynchus ENSABRP00000012649 67.8304 54.1147 ENSG00000171861 homo_sapiens ENSP00000306080 64.7619 48.3333 gasterosteus_aculeatus ENSGACP00000014524 60.5791 45.2116 ENSG00000171861 homo_sapiens ENSP00000306080 55.7143 42.619 sander_lucioperca ENSSLUP00000031432 55.8473 42.7208 ENSG00000171861 homo_sapiens ENSP00000306080 18.3333 12.381 hucho_hucho ENSHHUP00000031179 31.8182 21.4876 ENSG00000171861 homo_sapiens ENSP00000306080 64.5238 47.8571 betta_splendens ENSBSLP00000025318 57.7825 42.8571 ENSG00000171861 homo_sapiens ENSP00000306080 63.8095 47.381 pygocentrus_nattereri ENSPNAP00000013611 59.4235 44.1242 ENSG00000171861 homo_sapiens ENSP00000306080 67.619 50.7143 oncorhynchus_tshawytscha ENSOTSP00005071094 61.6052 46.2039 ENSG00000171861 homo_sapiens ENSP00000306080 65.2381 53.5714 aquila_chrysaetos_chrysaetos ENSACCP00020023417 65.7074 53.9568 ENSG00000171861 homo_sapiens ENSP00000306080 67.1429 50.2381 cyprinodon_variegatus ENSCVAP00000015928 62.1145 46.4758 ENSG00000171861 homo_sapiens ENSP00000306080 57.619 44.7619 denticeps_clupeoides ENSDCDP00000031569 59.3137 46.0784 ENSG00000171861 homo_sapiens ENSP00000306080 66.6667 50 takifugu_rubripes ENSTRUP00000003564 61.2691 45.9519 ENSG00000171861 homo_sapiens ENSP00000306080 37.1429 32.1429 ficedula_albicollis ENSFALP00000006047 70.2703 60.8108 ENSG00000171861 homo_sapiens ENSP00000306080 62.8571 50.7143 coturnix_japonica ENSCJPP00005020477 65.1852 52.5926 ENSG00000171861 homo_sapiens ENSP00000306080 52.619 39.7619 sinocyclocheilus_grahami ENSSGRP00000092959 65.3846 49.4083 ENSG00000171861 homo_sapiens ENSP00000306080 65.4762 50.2381 tetraodon_nigroviridis ENSTNIP00000019313 64.554 49.5305 ENSG00000171861 homo_sapiens ENSP00000306080 68.3333 51.4286 paramormyrops_kingsleyae ENSPKIP00000032715 61.3248 46.1538
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000451 involved_in rRNA 2-O-methylation 1 TAS Homo_sapiens(9606) Process GO:0003723 enables RNA binding 1 HDA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005739 located_in mitochondrion 1 IDA Homo_sapiens(9606) Component GO:0005759 located_in mitochondrial matrix 1 TAS Homo_sapiens(9606) Component GO:0042802 enables identical protein binding 1 IPI Homo_sapiens(9606) Function GO:0070039 enables rRNA (guanosine-2-O-)-methyltransferase activity 2 EXP,IMP Homo_sapiens(9606) Function
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