RBPWorld - a comprehensive database of RNA Binding Proteins

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Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	N.A.
Moonlighting functions	N.A.
Localizations	Stress granucle
BulkPerturb-seq

Description

Ensembl ID	ENSG00000170627	Gene ID	121355	Accession	26565
Symbol	GTSF1	Alias	Cue110;FAM112B	Full Name	gametocyte specific factor 1
Status	Confidence	Length	17653 bases	Strand	Minus strand
Position	12 : 54455950 - 54473602	RNA binding domain	zf-U11-48K
Summary	Predicted to enable metal ion binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000304185	zf-U11-48K	PF05253	9e-20	1
ENSP00000304185	zf-U11-48K	PF05253	9e-20	2
ENSP00000446485	zf-U11-48K	PF05253	9e-20	1
ENSP00000446485	zf-U11-48K	PF05253	9e-20	2
ENSP00000446918	zf-U11-48K	PF05253	1.1e-19	1
ENSP00000446918	zf-U11-48K	PF05253	1.1e-19	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
GTSF1-204	ENST00000546931	902	176aa	ENSP00000446918
GTSF1-209	ENST00000552397	1621	167aa	ENSP00000446485
GTSF1-201	ENST00000305879	807	167aa	ENSP00000304185
GTSF1-208	ENST00000552395	671	No protein	-
GTSF1-207	ENST00000552336	520	No protein	-
GTSF1-202	ENST00000546575	458	No protein	-
GTSF1-205	ENST00000548538	594	No protein	-
GTSF1-203	ENST00000546739	567	No protein	-
GTSF1-206	ENST00000549083	575	No protein	-

Gene Model

Click here to download ENSG00000170627's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000170627's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0000049	enables tRNA binding	1	IDA	Homo_sapiens(9606)	Function
GO:0005737	located_in cytoplasm	1	IEA	Homo_sapiens(9606)	Component
GO:0007283	involved_in spermatogenesis	1	IEA	Homo_sapiens(9606)	Process
GO:0030154	involved_in cell differentiation	1	IEA	Homo_sapiens(9606)	Process
GO:0046872	enables metal ion binding	1	IEA	Homo_sapiens(9606)	Function

Expression