RBPWorld - a comprehensive database of RNA Binding Proteins

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Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	N.A.
Drug	N.A.
Main interacting RNAs	N.A.
Moonlighting functions	E3 ligase
Localizations	N.A.
BulkPerturb-seq

Description

Ensembl ID	ENSG00000162931	Gene ID	51127	Accession	13430
Symbol	TRIM17	Alias	RBCC;terf;RNF16	Full Name	tripartite motif containing 17
Status	Confidence	Length	8927 bases	Strand	Minus strand
Position	1 : 228407935 - 228416861	RNA binding domain	SPRY
Summary	The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to cytoplasmic bodies. The protein is expressed almost exclusively in the testis, but its function is unknown. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2008]

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000295033	SPRY	PF00622	2.4e-16	1
ENSP00000355658	SPRY	PF00622	2.4e-16	1
ENSP00000355659	SPRY	PF00622	2.4e-16	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
TRIM17-204	ENST00000366698	2064	477aa	ENSP00000355659
TRIM17-203	ENST00000366697	2652	477aa	ENSP00000355658
TRIM17-201	ENST00000295033	1730	477aa	ENSP00000295033
TRIM17-205	ENST00000456946	1731	343aa	ENSP00000403312
TRIM17-207	ENST00000479800	925	267aa	ENSP00000430468
TRIM17-202	ENST00000355586	808	175aa	ENSP00000347794
TRIM17-206	ENST00000457345	575	30aa	ENSP00000397688
TRIM17-208	ENST00000520264	551	50aa	ENSP00000429555

Gene Model

Click here to download ENSG00000162931's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID
17113	Blood Pressure	4.035e-005	19060910

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSG00000162931's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0004842	enables ubiquitin-protein transferase activity	1	IDA	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0005575	is_active_in cellular_component	1	ND	Homo_sapiens(9606)	Component
GO:0005737	is_active_in cytoplasm	1	IBA	Homo_sapiens(9606)	Component
GO:0005764	located_in lysosome	1	IEA	Homo_sapiens(9606)	Component
GO:0005829	is_active_in cytosol	1	IBA	Homo_sapiens(9606)	Component
GO:0006914	involved_in autophagy	1	IDA	Homo_sapiens(9606)	Process
GO:0008270	enables zinc ion binding	1	IEA	Homo_sapiens(9606)	Function
GO:0010468	involved_in regulation of gene expression	1	IBA	Homo_sapiens(9606)	Process
GO:0016567	involved_in protein ubiquitination	1	IBA	Homo_sapiens(9606)	Process
GO:0030674	enables protein-macromolecule adaptor activity	1	IPI	Homo_sapiens(9606)	Function
GO:0032880	involved_in regulation of protein localization	1	IMP	Homo_sapiens(9606)	Process
GO:0051865	involved_in protein autoubiquitination	1	IDA	Homo_sapiens(9606)	Process
GO:0061630	enables ubiquitin protein ligase activity	1	IBA	Homo_sapiens(9606)	Function

Expression