RBP Type
Canonical_RBPs
Diseases
Drug
N.A.
Main interacting RNAs
rRNA
Moonlighting functions
N.A.
Localizations
N.A.
BulkPerturb-seq
N.A.
Ensembl ID ENSG00000162910 Gene ID
128308 Accession
16686
Symbol
MRPL55
Alias
L55nt;bL31m;MRP-L55;AAVG5835;PRO19675
Full Name
mitochondrial ribosomal protein L55
Status
Confidence
Length
2634 bases
Strand
Minus strand
Position
1 : 228106679 - 228109312
RNA binding domain
Mitoc_L55
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Multiple transcript variants encoding two different isoforms were identified through sequence analysis. [provided by RefSeq, Jul 2008]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000295008
Mitoc_L55
PF09776 3e-57
1
ENSP00000337342
Mitoc_L55
PF09776 3e-57
1
ENSP00000337361
Mitoc_L55
PF09776 3e-57
1
ENSP00000338189
Mitoc_L55
PF09776 3e-57
1
ENSP00000355694
Mitoc_L55
PF09776 3e-57
1
ENSP00000355695
Mitoc_L55
PF09776 3e-57
1
ENSP00000355696
Mitoc_L55
PF09776 3e-57
1
ENSP00000355697
Mitoc_L55
PF09776 3e-57
1
ENSP00000355700
Mitoc_L55
PF09776 3e-57
1
ENSP00000355701
Mitoc_L55
PF09776 3e-57
1
ENSP00000355702
Mitoc_L55
PF09776 3e-57
1
ENSP00000355703
Mitoc_L55
PF09776 3e-57
1
ENSP00000355705
Mitoc_L55
PF09776 3e-57
1
ENSP00000355707
Mitoc_L55
PF09776 3e-57
1
ENSP00000355708
Mitoc_L55
PF09776 3e-57
1
ENSP00000375740
Mitoc_L55
PF09776 3e-57
1
ENSP00000355699
Mitoc_L55
PF09776 6.6e-57
1
ENSP00000403614
Mitoc_L55
PF09776 6.6e-57
1
ENSP00000409966
Mitoc_L55
PF09776 4.1e-31
1
ENSP00000355692
Mitoc_L55
PF09776 4.8e-21
1
ENSP00000355693
Mitoc_L55
PF09776 4.8e-21
1
ENSP00000482290
Mitoc_L55
PF09776 4.8e-21
1
ENSP00000401737
Mitoc_L55
PF09776 1.7e-06
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
MRPL55-225
ENST00000465268
848
No protein
-
MRPL55-223
ENST00000459783
694
55aa
ENSP00000482290
MRPL55-206
ENST00000366732
722
55aa
ENSP00000355693
MRPL55-207
ENST00000366733
834
128aa
ENSP00000355694
MRPL55-208
ENST00000366734
990
128aa
ENSP00000355695
MRPL55-209
ENST00000366735
1212
128aa
ENSP00000355696
MRPL55-210
ENST00000366736
660
128aa
ENSP00000355697
MRPL55-211
ENST00000366738
705
164aa
ENSP00000355699
MRPL55-212
ENST00000366739
641
128aa
ENSP00000355700
MRPL55-213
ENST00000366740
644
128aa
ENSP00000355701
MRPL55-214
ENST00000366741
603
128aa
ENSP00000355702
MRPL55-215
ENST00000366742
630
128aa
ENSP00000355703
MRPL55-216
ENST00000366744
726
128aa
ENSP00000355705
MRPL55-204
ENST00000348259
661
128aa
ENSP00000338189
MRPL55-201
ENST00000295008
632
128aa
ENSP00000295008
MRPL55-205
ENST00000366731
1423
55aa
ENSP00000355692
MRPL55-217
ENST00000366746
565
128aa
ENSP00000355707
MRPL55-218
ENST00000366747
603
128aa
ENSP00000355708
MRPL55-202
ENST00000336300
722
128aa
ENSP00000337361
MRPL55-221
ENST00000430433
864
164aa
ENSP00000403614
MRPL55-203
ENST00000336520
738
128aa
ENSP00000337342
MRPL55-219
ENST00000391867
665
128aa
ENSP00000375740
MRPL55-222
ENST00000457264
544
76aa
ENSP00000409966
MRPL55-220
ENST00000411464
767
43aa
ENSP00000401737
MRPL55-234
ENST00000497758
470
No protein
-
MRPL55-224
ENST00000464148
636
24aa
ENSP00000484813
MRPL55-227
ENST00000475832
858
No protein
-
MRPL55-226
ENST00000473066
820
No protein
-
MRPL55-231
ENST00000492170
241
No protein
-
MRPL55-228
ENST00000476267
169
No protein
-
MRPL55-232
ENST00000495434
224
8aa
ENSP00000479463
MRPL55-229
ENST00000483159
790
4aa
ENSP00000479251
MRPL55-233
ENST00000495899
790
No protein
-
MRPL55-230
ENST00000489430
847
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000162910
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
ENSG00000162910 homo_sapiens ENSP00000337342 96.875 96.0938 nomascus_leucogenys ENSNLEP00000017281 75.6098 75 ENSG00000162910 homo_sapiens ENSP00000337342 98.4375 98.4375 pan_paniscus ENSPPAP00000014781 76.8293 76.8293 ENSG00000162910 homo_sapiens ENSP00000337342 97.6562 96.0938 pongo_abelii ENSPPYP00000000144 76.6871 75.4601 ENSG00000162910 homo_sapiens ENSP00000337342 97.6562 97.6562 pan_troglodytes ENSPTRP00000003495 76.2195 76.2195 ENSG00000162910 homo_sapiens ENSP00000337342 97.6562 97.6562 gorilla_gorilla ENSGGOP00000015325 76.2195 76.2195 ENSG00000162910 homo_sapiens ENSP00000337342 74.2188 58.5938 sarcophilus_harrisii ENSSHAP00000036559 75.3968 59.5238 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 66.4062 dasypus_novemcinctus ENSDNOP00000015943 79.2 68 ENSG00000162910 homo_sapiens ENSP00000337342 89.8438 85.9375 callithrix_jacchus ENSCJAP00000030786 72.327 69.1824 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 92.1875 cercocebus_atys ENSCATP00000000312 80.1325 78.1457 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 91.4062 macaca_fascicularis ENSMFAP00000050716 74.2331 71.7791 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 91.4062 macaca_nemestrina ENSMNEP00000025884 85.8156 82.9787 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 91.4062 papio_anubis ENSPANP00000011184 74.2331 71.7791 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 92.1875 mandrillus_leucophaeus ENSMLEP00000038722 77.0701 75.1592 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 70.3125 mus_spretus MGP_SPRETEiJ_P0028277 73.8806 67.1642 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 71.0938 equus_asinus ENSEASP00005055981 80 72.8 ENSG00000162910 homo_sapiens ENSP00000337342 76.5625 64.8438 capra_hircus ENSCHIP00000028761 77.7778 65.873 ENSG00000162910 homo_sapiens ENSP00000337342 75 64.0625 loxodonta_africana ENSLAFP00000002508 76.1905 65.0794 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 71.0938 panthera_leo ENSPLOP00000000021 73.3333 67.4074 ENSG00000162910 homo_sapiens ENSP00000337342 52.3438 42.1875 ailuropoda_melanoleuca ENSAMEP00000030599 54.918 44.2623 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 68.75 ailuropoda_melanoleuca ENSAMEP00000017201 79.3651 69.8413 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 66.4062 bos_indicus_hybrid ENSBIXP00005005409 71.4286 60.7143 ENSG00000162910 homo_sapiens ENSP00000337342 78.9062 68.75 oryctolagus_cuniculus ENSOCUP00000013212 80.8 70.4 ENSG00000162910 homo_sapiens ENSP00000337342 81.25 71.0938 canis_lupus_familiaris ENSCAFP00845010696 83.871 73.3871 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 71.0938 panthera_pardus ENSPPRP00000010406 78.5714 72.2222 ENSG00000162910 homo_sapiens ENSP00000337342 83.5938 75.7812 marmota_marmota_marmota ENSMMMP00000019761 84.252 76.378 ENSG00000162910 homo_sapiens ENSP00000337342 60.1562 49.2188 balaenoptera_musculus ENSBMSP00010011970 35.814 29.3023 ENSG00000162910 homo_sapiens ENSP00000337342 82.0312 75.7812 cavia_porcellus ENSCPOP00000012831 82.0312 75.7812 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 70.3125 felis_catus ENSFCAP00000014099 78.5714 71.4286 ENSG00000162910 homo_sapiens ENSP00000337342 49.2188 38.2812 ursus_americanus ENSUAMP00000029653 40.9091 31.8182 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 67.9688 ursus_americanus ENSUAMP00000020918 78.5714 69.0476 ENSG00000162910 homo_sapiens ENSP00000337342 71.875 54.6875 monodelphis_domestica ENSMODP00000017244 75.4098 57.377 ENSG00000162910 homo_sapiens ENSP00000337342 76.5625 65.625 bison_bison_bison ENSBBBP00000008198 79.0323 67.7419 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 65.625 monodon_monoceros ENSMMNP00015004729 78.5714 66.6667 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 67.9688 sus_scrofa ENSSSCP00000020702 79.3651 69.0476 ENSG00000162910 homo_sapiens ENSP00000337342 88.2812 85.9375 microcebus_murinus ENSMICP00000034050 88.2812 85.9375 ENSG00000162910 homo_sapiens ENSP00000337342 75.7812 71.875 octodon_degus ENSODEP00000001352 81.5126 77.3109 ENSG00000162910 homo_sapiens ENSP00000337342 81.25 72.6562 jaculus_jaculus ENSJJAP00000020524 81.8898 73.2283 ENSG00000162910 homo_sapiens ENSP00000337342 75.7812 65.625 ovis_aries_rambouillet ENSOARP00020023560 78.2258 67.7419 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 67.1875 ursus_maritimus ENSUMAP00000000874 78.5714 68.254 ENSG00000162910 homo_sapiens ENSP00000337342 75.7812 64.0625 ochotona_princeps ENSOPRP00000013777 65.5405 55.4054 ENSG00000162910 homo_sapiens ENSP00000337342 76.5625 63.2812 delphinapterus_leucas ENSDLEP00000016524 77.1654 63.7795 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 67.1875 physeter_catodon ENSPCTP00005002431 50.5051 43.4343 ENSG00000162910 homo_sapiens ENSP00000337342 78.9062 70.3125 mus_caroli MGP_CAROLIEiJ_P0026906 75.3731 67.1642 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 71.0938 mus_musculus ENSMUSP00000104414 74.6269 67.9104 ENSG00000162910 homo_sapiens ENSP00000337342 82.0312 71.0938 mustela_putorius_furo ENSMPUP00000000997 83.3333 72.2222 ENSG00000162910 homo_sapiens ENSP00000337342 88.2812 83.5938 aotus_nancymaae ENSANAP00000038285 71.9745 68.1529 ENSG00000162910 homo_sapiens ENSP00000337342 90.625 84.375 saimiri_boliviensis_boliviensis ENSSBOP00000038656 76.8212 71.5232 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 91.4062 chlorocebus_sabaeus ENSCSAP00000012534 94.5312 91.4062 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 71.0938 mesocricetus_auratus ENSMAUP00000000396 78.7402 71.6535 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 66.4062 phocoena_sinus ENSPSNP00000010316 78.5714 67.4603 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 70.3125 camelus_dromedarius ENSCDRP00005009902 78.7402 70.8661 ENSG00000162910 homo_sapiens ENSP00000337342 83.5938 77.3438 carlito_syrichta ENSTSYP00000002682 83.5938 77.3438 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 71.0938 panthera_tigris_altaica ENSPTIP00000007016 73.3333 67.4074 ENSG00000162910 homo_sapiens ENSP00000337342 60.1562 49.2188 rattus_norvegicus ENSRNOP00000076396 55.7971 45.6522 ENSG00000162910 homo_sapiens ENSP00000337342 89.8438 85.1562 prolemur_simus ENSPSMP00000018739 89.8438 85.1562 ENSG00000162910 homo_sapiens ENSP00000337342 80.4688 71.875 microtus_ochrogaster ENSMOCP00000026602 76.8657 68.6567 ENSG00000162910 homo_sapiens ENSP00000337342 82.0312 72.6562 peromyscus_maniculatus_bairdii ENSPEMP00000008903 78.3582 69.403 ENSG00000162910 homo_sapiens ENSP00000337342 76.5625 65.625 bos_mutus ENSBMUP00000017653 79.0323 67.7419 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 69.5312 mus_spicilegus ENSMSIP00000025051 73.8806 66.4179 ENSG00000162910 homo_sapiens ENSP00000337342 81.25 72.6562 cricetulus_griseus_chok1gshd ENSCGRP00001021754 81.8898 73.2283 ENSG00000162910 homo_sapiens ENSP00000337342 75 65.625 myotis_lucifugus ENSMLUP00000019576 75.5906 66.1417 ENSG00000162910 homo_sapiens ENSP00000337342 71.875 54.6875 vombatus_ursinus ENSVURP00010004667 73.0159 55.5556 ENSG00000162910 homo_sapiens ENSP00000337342 71.875 54.6875 vombatus_ursinus ENSVURP00010002516 73.0159 55.5556 ENSG00000162910 homo_sapiens ENSP00000337342 75 57.0312 vombatus_ursinus ENSVURP00010014342 76.1905 57.9365 ENSG00000162910 homo_sapiens ENSP00000337342 80.4688 72.6562 rhinolophus_ferrumequinum ENSRFEP00010030858 83.0645 75 ENSG00000162910 homo_sapiens ENSP00000337342 82.0312 71.875 neovison_vison ENSNVIP00000001116 83.3333 73.0159 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 66.4062 bos_taurus ENSBTAP00000027614 71.4286 60.7143 ENSG00000162910 homo_sapiens ENSP00000337342 81.25 73.4375 heterocephalus_glaber_female ENSHGLP00000049333 81.8898 74.0157 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 92.1875 rhinopithecus_bieti ENSRBIP00000028592 77.0701 75.1592 ENSG00000162910 homo_sapiens ENSP00000337342 81.25 71.0938 canis_lupus_dingo ENSCAFP00020007074 83.871 73.3871 ENSG00000162910 homo_sapiens ENSP00000337342 82.8125 76.5625 sciurus_vulgaris ENSSVLP00005005313 83.4646 77.1654 ENSG00000162910 homo_sapiens ENSP00000337342 75 65.625 procavia_capensis ENSPCAP00000009854 60 52.5 ENSG00000162910 homo_sapiens ENSP00000337342 78.125 68.75 nannospalax_galili ENSNGAP00000026158 78.125 68.75 ENSG00000162910 homo_sapiens ENSP00000337342 76.5625 65.625 bos_grunniens ENSBGRP00000005063 79.0323 67.7419 ENSG00000162910 homo_sapiens ENSP00000337342 85.9375 78.125 chinchilla_lanigera ENSCLAP00000001206 85.9375 78.125 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 67.9688 cervus_hanglu_yarkandensis ENSCHYP00000015494 79.2 69.6 ENSG00000162910 homo_sapiens ENSP00000337342 78.9062 68.75 catagonus_wagneri ENSCWAP00000027271 80.1587 69.8413 ENSG00000162910 homo_sapiens ENSP00000337342 82.0312 77.3438 otolemur_garnettii ENSOGAP00000009829 82.6772 77.9528 ENSG00000162910 homo_sapiens ENSP00000337342 89.8438 86.7188 cebus_imitator ENSCCAP00000027779 71.875 69.375 ENSG00000162910 homo_sapiens ENSP00000337342 85.1562 75.7812 urocitellus_parryii ENSUPAP00010011841 85.8268 76.378 ENSG00000162910 homo_sapiens ENSP00000337342 75.7812 66.4062 moschus_moschiferus ENSMMSP00000030130 76.9841 67.4603 ENSG00000162910 homo_sapiens ENSP00000337342 94.5312 92.1875 rhinopithecus_roxellana ENSRROP00000019707 77.0701 75.1592 ENSG00000162910 homo_sapiens ENSP00000337342 77.3438 69.5312 mus_pahari MGP_PahariEiJ_P0033670 73.8806 66.4179 ENSG00000162910 homo_sapiens ENSP00000337342 87.5 83.5938 propithecus_coquereli ENSPCOP00000005695 87.5 83.5938
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0003735 enables structural constituent of ribosome 2 IBA,ISS Homo_sapiens(9606) Function GO:0005739 located_in mitochondrion 1 IDA Homo_sapiens(9606) Component GO:0005743 located_in mitochondrial inner membrane 2 NAS,TAS Homo_sapiens(9606) Component GO:0005762 part_of mitochondrial large ribosomal subunit 4 IBA,IDA,ISS,NAS Homo_sapiens(9606) Component GO:0006412 involved_in translation 2 IBA,ISS Homo_sapiens(9606) Process GO:0032543 involved_in mitochondrial translation 1 NAS Homo_sapiens(9606) Process GO:0045202 located_in synapse 1 IEA Homo_sapiens(9606) Component
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