Functions and Diseases

RBP Type Canonical_RBPs
Diseases Disease
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions E3 ligase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000162032 Gene ID 90864 Accession 30629
Symbol SPSB3 Alias SSB3;C16orf31 Full Name splA/ryanodine receptor domain and SOCS box containing 3
Status Confidence Length 16989 bases Strand Minus strand
Position 16 : 1776712 - 1793700 RNA binding domain SPRY
Summary Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of SCF ubiquitin ligase complex. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSP00000301717 SPRY PF00622 7.8e-18 1
ENSP00000457206 SPRY PF00622 7.8e-18 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
SPSB3-208 ENST00000566339 1535 355aa ENSP00000457206
SPSB3-206 ENST00000564709 2316 No protein -
SPSB3-211 ENST00000569380 1781 No protein -
SPSB3-209 ENST00000567868 1628 No protein -
SPSB3-204 ENST00000563741 1746 No protein -
SPSB3-201 ENST00000301717 1449 355aa ENSP00000301717
SPSB3-202 ENST00000563668 1509 No protein -
SPSB3-203 ENST00000563705 876 No protein -
SPSB3-212 ENST00000569769 580 168aa ENSP00000455098
SPSB3-207 ENST00000565550 898 No protein -
SPSB3-205 ENST00000564070 714 No protein -
SPSB3-210 ENST00000568416 520 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005829located_in cytosol1TASHomo_sapiens(9606)Component
GO:0016567involved_in protein ubiquitination1IEAHomo_sapiens(9606)Process
GO:0019005part_of SCF ubiquitin ligase complex1IBAHomo_sapiens(9606)Component
GO:0043161involved_in proteasome-mediated ubiquitin-dependent protein catabolic process1IBAHomo_sapiens(9606)Process

Expression