RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
mRNA
Moonlighting functions
N.A.
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000160075 Gene ID
29101
Accession
25016
Symbol
SSU72
Alias
HSPC182;PNAS-120
Full Name
SSU72 homolog, RNA polymerase II CTD phosphatase
Status
Confidence
Length
33191 bases
Strand
Minus strand
Position
1 : 1541673 - 1574863
RNA binding domain
Ssu72
Summary
Enables RNA polymerase II CTD heptapeptide repeat phosphatase activity. Involved in dephosphorylation of RNA polymerase II C-terminal domain and mRNA polyadenylation. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000291386
Ssu72
PF04722
1.8e-91
1
ENSP00000351955
Ssu72
PF04722
5.4e-34
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
SSU72-201
ENST00000291386
1284
194aa
ENSP00000291386
SSU72-204
ENST00000378726
2238
No protein
-
SSU72-203
ENST00000378725
619
No protein
-
SSU72-202
ENST00000359060
4176
153aa
ENSP00000351955
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
27812 Blood Glucose 1.8920000E-005 - 27841 Blood Glucose 8.7610000E-007 - 27850 Blood Glucose 3.2550000E-005 - 28068 Blood Glucose 6.4440000E-005 - 28085 Blood Glucose 2.5370000E-005 -
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005654 located_in nucleoplasm 1 IDA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 1 IDA Homo_sapiens(9606) Component GO:0005847 part_of mRNA cleavage and polyadenylation specificity factor complex 1 IBA Homo_sapiens(9606) Component GO:0006357 involved_in regulation of transcription by RNA polymerase II 1 IEA Homo_sapiens(9606) Process GO:0006369 involved_in termination of RNA polymerase II transcription 1 IBA Homo_sapiens(9606) Process GO:0006378 involved_in mRNA polyadenylation 2 IBA,IMP Homo_sapiens(9606) Process GO:0008420 enables RNA polymerase II CTD heptapeptide repeat phosphatase activity 2 IBA,IDA Homo_sapiens(9606) Function GO:0017018 enables myosin phosphatase activity 1 IEA Homo_sapiens(9606) Function
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