RBP Type
Non-canonical_RBPs
Diseases
SARS-COV-2 Dengue
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
N.A.
Localizations
Stress granucle
BulkPerturb-seq
Ensembl ID ENSG00000155959 Gene ID
7411
Accession
12662
Symbol
VBP1
Alias
PFD3;PFDN3;VBP-1;HIBBJ46
Full Name
VHL binding protein 1
Status
Confidence
Length
42835 bases
Strand
Plus strand
Position
X : 155197007 - 155239841
RNA binding domain
N.A.
Summary
The protein encoded by this gene interacts with the Von Hippel-Lindau protein to form an intracellular complex. The encoded protein functions as a chaperone protein, and may play a role in the transport of the Von Hippel-Lindau protein from the perinuclear granules to the nucleus or cytoplasm. Alternative splicing and the use of alternate transcription start sites results in multiple transcript variants encoding different protein isoforms. [provided by RefSeq, Jan 2015]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
VBP1-203
ENST00000535916
944
192aa
ENSP00000438694
VBP1-201
ENST00000286428
1616
197aa
ENSP00000286428
VBP1-202
ENST00000460509
586
No protein
-
VBP1-204
ENST00000625964
1547
192aa
ENSP00000486053
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0001540 enables amyloid-beta binding 1 IDA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 located_in nucleus 1 IEA Homo_sapiens(9606) Component GO:0005737 is_active_in cytoplasm 1 IBA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 1 IDA Homo_sapiens(9606) Component GO:0005844 part_of polysome 1 IBA Homo_sapiens(9606) Component GO:0006457 involved_in protein folding 1 IDA Homo_sapiens(9606) Process GO:0007017 involved_in microtubule-based process 1 IBA Homo_sapiens(9606) Process GO:0007021 involved_in tubulin complex assembly 1 IBA Homo_sapiens(9606) Process GO:0015631 enables tubulin binding 1 IBA Homo_sapiens(9606) Function GO:0016272 part_of prefoldin complex 3 IBA,IDA,NAS Homo_sapiens(9606) Component GO:0043231 located_in intracellular membrane-bounded organelle 1 IDA Homo_sapiens(9606) Component GO:0050821 involved_in protein stabilization 1 NAS Homo_sapiens(9606) Process GO:0051082 enables unfolded protein binding 1 IDA Homo_sapiens(9606) Function GO:1905907 involved_in negative regulation of amyloid fibril formation 1 IDA Homo_sapiens(9606) Process
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