RBP Type
Non-canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
TF
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000147421 Gene ID
79618
Accession
26137
Symbol
HMBOX1
Alias
HOT1;TAH1;PBHNF;HNF1LA
Full Name
homeobox containing 1
Status
Confidence
Length
174370 bases
Strand
Plus strand
Position
8 : 28890395 - 29064764
RNA binding domain
N.A.
Summary
Enables double-stranded telomeric DNA binding activity; identical protein binding activity; and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of telomerase activity; and positive regulation of telomere maintenance via telomerase. Located in several cellular components, including centrosome; chromosome, telomeric region; and nuclear body. [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
HMBOX1-201
ENST00000287701
3711
420aa
ENSP00000287701
HMBOX1-207
ENST00000519662
811
118aa
ENSP00000429767
HMBOX1-212
ENST00000558662
1765
405aa
ENSP00000453211
HMBOX1-210
ENST00000523613
1730
396aa
ENSP00000452827
HMBOX1-215
ENST00000560599
1426
364aa
ENSP00000453185
HMBOX1-203
ENST00000397358
4082
420aa
ENSP00000380516
HMBOX1-214
ENST00000560357
979
No protein
-
HMBOX1-206
ENST00000519047
1551
386aa
ENSP00000430059
HMBOX1-208
ENST00000521516
2216
304aa
ENSP00000430238
HMBOX1-213
ENST00000560269
569
No protein
-
HMBOX1-202
ENST00000355231
1694
386aa
ENSP00000475196
HMBOX1-211
ENST00000524238
1731
443aa
ENSP00000430110
HMBOX1-205
ENST00000518080
559
No protein
-
HMBOX1-204
ENST00000517386
761
No protein
-
HMBOX1-209
ENST00000522468
817
45aa
ENSP00000429854
HMBOX1-216
ENST00000561377
307
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
4186 Triglycerides 5.21002327071862E-5 17903299 6846 C-Reactive Protein 7.27829925104562E-5 17903293 7141 C-Reactive Protein 2.15687394882202E-5 17903293 23873 Waist-Hip Ratio 2.1440000E-005 - 25323 Waist-Hip Ratio 5.4440000E-005 - 63607 Hormones 6E-6 23251661
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000122 involved_in negative regulation of transcription by RNA polymerase II 1 IDA Homo_sapiens(9606) Process GO:0000781 located_in chromosome, telomeric region 2 HDA,IDA Homo_sapiens(9606) Component GO:0000785 part_of chromatin 1 ISA Homo_sapiens(9606) Component GO:0003691 enables double-stranded telomeric DNA binding 1 IDA Homo_sapiens(9606) Function GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005634 is_active_in nucleus 2 IBA,IDA Homo_sapiens(9606) Component GO:0005654 located_in nucleoplasm 1 IDA Homo_sapiens(9606) Component GO:0005737 located_in cytoplasm 1 IDA Homo_sapiens(9606) Component GO:0005813 located_in centrosome 1 IDA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 1 IDA Homo_sapiens(9606) Component GO:0015030 located_in Cajal body 1 IEA Homo_sapiens(9606) Component GO:0016604 located_in nuclear body 1 IDA Homo_sapiens(9606) Component GO:0016605 located_in PML body 1 IEA Homo_sapiens(9606) Component GO:0032212 involved_in positive regulation of telomere maintenance via telomerase 2 IDA,IMP Homo_sapiens(9606) Process GO:0035563 involved_in positive regulation of chromatin binding 1 ISS Homo_sapiens(9606) Process GO:0042162 enables telomeric DNA binding 2 IDA,IMP Homo_sapiens(9606) Function GO:0042802 enables identical protein binding 1 IPI Homo_sapiens(9606) Function GO:0043565 enables sequence-specific DNA binding 1 IDA Homo_sapiens(9606) Function GO:0044877 enables protein-containing complex binding 1 IPI Homo_sapiens(9606) Function GO:0045892 involved_in negative regulation of DNA-templated transcription 1 IDA Homo_sapiens(9606) Process GO:0045893 involved_in positive regulation of DNA-templated transcription 1 IEA Homo_sapiens(9606) Process GO:0051972 involved_in regulation of telomerase activity 1 IDA Homo_sapiens(9606) Process GO:0051973 involved_in positive regulation of telomerase activity 2 IDA,IMP Homo_sapiens(9606) Process GO:1990837 enables sequence-specific double-stranded DNA binding 1 IDA Homo_sapiens(9606) Function
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