RBP Type
Canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
E3 ligase
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000146755 Gene ID
135892
Accession
19017
Symbol
TRIM50
Alias
TRIM50A
Full Name
tripartite motif containing 50
Status
Confidence
Length
15547 bases
Strand
Minus strand
Position
7 : 73312536 - 73328082
RNA binding domain
SPRY
Summary
Enables identical protein binding activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within regulation of establishment of protein localization. Located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
ENSP00000327994
SPRY
PF00622
4.8e-08
1
ENSP00000413875
SPRY
PF00622
4.8e-08
1
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
TRIM50-201
ENST00000333149
2050
487aa
ENSP00000327994
TRIM50-202
ENST00000453152
1599
487aa
ENSP00000413875
TRIM50-203
ENST00000488217
548
No protein
-
TRIM50-204
ENST00000493498
555
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005737 is_active_in cytoplasm 1 IBA Homo_sapiens(9606) Component GO:0005829 located_in cytosol 1 IDA Homo_sapiens(9606) Component GO:0008270 enables zinc ion binding 1 IEA Homo_sapiens(9606) Function GO:0016567 involved_in protein ubiquitination 1 IBA Homo_sapiens(9606) Process GO:0042802 enables identical protein binding 1 IPI Homo_sapiens(9606) Function GO:0061630 enables ubiquitin protein ligase activity 1 IBA Homo_sapiens(9606) Function
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