RBP Type
Non-canonical_RBPs
Diseases
SARS-COV-2
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
N.A.
Localizations
Stress granucle
BulkPerturb-seq
Ensembl ID ENSG00000144848 Gene ID
64422
Accession
20962
Symbol
ATG3
Alias
APG3;APG3L;hApg3;PC3-96;APG3-LIKE
Full Name
autophagy related 3
Status
Confidence
Length
29537 bases
Strand
Minus strand
Position
3 : 112532510 - 112562046
RNA binding domain
N.A.
Summary
This gene encodes a ubiquitin-like-conjugating enzyme and is a component of ubiquitination-like systems involved in autophagy, the process of degradation, turnover and recycling of cytoplasmic constituents in eukaryotic cells. This protein is known to play a role in regulation of autophagy during cell death. A pseudogene of this gene is located on chromosome 20. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
ATG3-201
ENST00000283290
1568
314aa
ENSP00000283290
ATG3-202
ENST00000402314
3010
311aa
ENSP00000385943
ATG3-207
ENST00000494571
2758
No protein
-
ATG3-208
ENST00000495756
1455
No protein
-
ATG3-204
ENST00000467275
559
No protein
-
ATG3-209
ENST00000496423
737
74aa
ENSP00000420259
ATG3-206
ENST00000492886
639
83aa
ENSP00000420378
ATG3-203
ENST00000465980
560
No protein
-
ATG3-205
ENST00000488910
681
No protein
-
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
93207 Asthma 2E-6 23829686
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0000045 involved_in autophagosome assembly 2 IBA,ISS Homo_sapiens(9606) Process GO:0000407 is_active_in phagophore assembly site 1 IBA Homo_sapiens(9606) Component GO:0000422 involved_in autophagy of mitochondrion 1 IBA Homo_sapiens(9606) Process GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005737 is_active_in cytoplasm 1 IDA Homo_sapiens(9606) Component GO:0005829 is_active_in cytosol 3 IBA,IDA,TAS Homo_sapiens(9606) Component GO:0006612 involved_in protein targeting to membrane 1 ISS Homo_sapiens(9606) Process GO:0016567 involved_in protein ubiquitination 1 IDA Homo_sapiens(9606) Process GO:0019776 enables Atg8-family ligase activity 2 IBA,ISS Homo_sapiens(9606) Function GO:0019777 enables Atg12 transferase activity 1 ISS Homo_sapiens(9606) Function GO:0019787 enables ubiquitin-like protein transferase activity 1 IDA Homo_sapiens(9606) Function GO:0019899 enables enzyme binding 1 IPI Homo_sapiens(9606) Function GO:0043653 involved_in mitochondrial fragmentation involved in apoptotic process 1 ISS Homo_sapiens(9606) Process GO:0044804 involved_in nucleophagy 1 IBA Homo_sapiens(9606) Process GO:0050765 involved_in negative regulation of phagocytosis 1 IEA Homo_sapiens(9606) Process GO:1902017 involved_in regulation of cilium assembly 1 ISS Homo_sapiens(9606) Process
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