RBPWorld - a comprehensive database of RNA Binding Proteins

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	Cancer
Drug	N.A.
Main interacting RNAs	N.A.
Moonlighting functions	N.A.
Localizations	Stress granucleNucleoliNucleoli rim
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000141664	Gene ID	54877	Accession	22916
Symbol	ZCCHC2	Alias	C18orf49	Full Name	zinc finger CCHC-type containing 2
Status	Confidence	Length	64685 bases	Strand	Plus strand
Position	18 : 62523025 - 62587709	RNA binding domain	zf-CCHC
Summary	Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000269499	zf-CCHC	PF00098	2.3e-05	1
ENSP00000464791	zf-CCHC	PF00098	1.8e-05	1
ENSP00000468368	zf-CCHC	PF00098	2.5e-06	1
ENSP00000468789	zf-CCHC	PF00098	2.5e-05	1

Showing 1 to 4 of 4 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
ZCCHC2-201	ENST00000269499	5937	1178aa	ENSP00000269499
ZCCHC2-202	ENST00000585873	5652	1098aa	ENSP00000468789
ZCCHC2-203	ENST00000585949	2429	No protein	-
ZCCHC2-204	ENST00000586834	4765	857aa	ENSP00000464791
ZCCHC2-205	ENST00000587612	353	No protein	-
ZCCHC2-206	ENST00000588676	1877	378aa	ENSP00000465548
ZCCHC2-207	ENST00000590840	2376	No protein	-
ZCCHC2-208	ENST00000591145	673	106aa	ENSP00000468368
ZCCHC2-209	ENST00000591435	455	No protein	-
ZCCHC2-210	ENST00000591632	608	No protein	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Gene Model

Click here to download ENSG00000141664's gene model file

Phenotypes

Show entries

Search:

ensgID	Trait	pValue	Pubmed ID
7422	Dehydroepiandrosterone	1.87985002822317E-7	17903292
11537	Neuropsychological Tests	2.14644570822773E-7	17903297
11580	Mental Competency	9.9710275533351E-9	17903295
15211	Heart Failure	5.0353898E-004	-
59097	Pulmonary Disease, Chronic Obstructive	1.3970000E-005	22837378
90954	Longevity	8E-6	27015805
94966	Breast Feeding	1E-6	25475840
106252	Circadian Rhythm	3E-6	26835600

Showing 1 to 8 of 8 entries

Previous1Next

GWAS

Show entries

Search:

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
ENSG00000141664	rs200296776	18	62570172	Menopause (age at onset)	29773799	1.15	EFO_0004704
ENSG00000141664	rs4941144	18	62578921	Morning vs. evening chronotype	26835600		EFO_0004354
ENSG00000141664	rs200296776	18	62570172	Menopause (age at onset)	29773799		EFO_0004704
ENSG00000141664	rs6567288	18	62551101	Educational attainment (MTAG)	30038396	0.0074	EFO_0004784
ENSG00000141664	rs6567288	18	62551101	Educational attainment (years of education)	30038396	0.0079	EFO_0004784
ENSG00000141664	rs56076457	18	62571435	Morning person	30595370		EFO_0008328
ENSG00000141664	rs12172847	18	62555784	Pulse pressure	30224653	0.1184	EFO_0005763
ENSG00000141664	rs17070072	18	62538309	Depressive symptoms x dependent stressful life events interaction (1df test)	30718454	0.0820149	EFO_0007006\|EFO_0007781
ENSG00000141664	rs17070072	18	62538309	Depressive symptoms x dependent stressful life events interaction (2df test)	30718454	0.07339185	EFO_0007006\|EFO_0007781
ENSG00000141664	rs11152350	18	62573119	Chronotype	30696823	1.0284985	EFO_0008328

Showing 1 to 10 of 11 entries

Previous1 2Next

Protein-Protein Interaction (PPI)

Click here to download ENSG00000141664's PPI file

Paralogs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000141664	homo_sapiens	ENSP00000499622	40.5157	27.9926	homo_sapiens	ENSP00000269499	37.3514	25.8065

Showing 1 to 1 of 1 entries

Previous1Next

Orthologs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000141664	homo_sapiens	ENSP00000269499	72.6655	72.326	nomascus_leucogenys	ENSNLEP00000010535	99.8833	99.4166
ENSG00000141664	homo_sapiens	ENSP00000269499	92.5297	92.275	pan_paniscus	ENSPPAP00000011668	99.8168	99.5421
ENSG00000141664	homo_sapiens	ENSP00000269499	99.4058	99.1511	pongo_abelii	ENSPPYP00000010336	99.4902	99.2353
ENSG00000141664	homo_sapiens	ENSP00000269499	99.8302	99.8302	pan_troglodytes	ENSPTRP00000017118	99.915	99.915
ENSG00000141664	homo_sapiens	ENSP00000269499	92.275	92.0204	gorilla_gorilla	ENSGGOP00000002918	99.2694	98.9954
ENSG00000141664	homo_sapiens	ENSP00000269499	75.4669	67.5722	ornithorhynchus_anatinus	ENSOANP00000053230	78.1195	69.9473
ENSG00000141664	homo_sapiens	ENSP00000269499	88.1154	80.8998	sarcophilus_harrisii	ENSSHAP00000019008	85.9983	78.9561
ENSG00000141664	homo_sapiens	ENSP00000269499	39.3888	35.0594	notamacropus_eugenii	ENSMEUP00000014198	81.1189	72.2028
ENSG00000141664	homo_sapiens	ENSP00000269499	72.1562	68.9304	choloepus_hoffmanni	ENSCHOP00000002091	94.8661	90.625
ENSG00000141664	homo_sapiens	ENSP00000269499	88.2852	84.9745	dasypus_novemcinctus	ENSDNOP00000012369	95.064	91.4991

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

Gene Ontology

Show entries

Search:

Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003676	enables nucleic acid binding	1	IEA	Homo_sapiens(9606)	Function
GO:0005737	located_in cytoplasm	1	IDA	Homo_sapiens(9606)	Component
GO:0008270	enables zinc ion binding	1	IEA	Homo_sapiens(9606)	Function
GO:0035091	enables phosphatidylinositol binding	1	IEA	Homo_sapiens(9606)	Function

Showing 1 to 4 of 4 entries

Previous1Next

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression