RBP Type
Non-canonical_RBPs
Diseases
N.A.
Drug
N.A.
Main interacting RNAs
N.A.
Moonlighting functions
Metabolic enzyme
Localizations
N.A.
BulkPerturb-seq
Ensembl ID ENSG00000138750 Gene ID
53371
Accession
17359
Symbol
NUP54
Alias
DYT37
Full Name
nucleoporin 54
Status
Confidence
Length
40924 bases
Strand
Minus strand
Position
4 : 76107562 - 76148485
RNA binding domain
N.A.
Summary
The nuclear envelope creates distinct nuclear and cytoplasmic compartments in eukaryotic cells. It consists of two concentric membranes perforated by nuclear pores, large protein complexes that form aqueous channels to regulate the flow of macromolecules between the nucleus and the cytoplasm. These complexes are composed of at least 100 different polypeptide subunits, many of which belong to the nucleoporin family. This gene encodes a member of the phe-gly (FG) repeat-containing nucleoporin subset. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jun 2013]
RNA binding domains (RBDs)
Protein
Domain
Pfam ID
E-value
Domain number
RNA binding proteomes (RBPomes)
Pubmed ID
Full Name
Cell
Author
Time
Doi
Literatures on RNA binding capacity
Pubmed ID
Title
Author
Time
Journal
Name
Transcript ID
bp
Protein
Translation ID
NUP54-218
ENST00000695546
6815
138aa
ENSP00000512003
NUP54-219
ENST00000695547
4320
561aa
ENSP00000512004
NUP54-208
ENST00000508604
1671
No protein
-
NUP54-209
ENST00000510569
2754
No protein
-
NUP54-201
ENST00000264883
2249
507aa
ENSP00000264883
NUP54-205
ENST00000507257
2002
102aa
ENSP00000425243
NUP54-217
ENST00000515460
2413
327aa
ENSP00000512009
NUP54-225
ENST00000695553
2552
83aa
ENSP00000512011
NUP54-226
ENST00000695554
1917
253aa
ENSP00000512012
NUP54-220
ENST00000695548
2234
No protein
-
NUP54-215
ENST00000514313
4547
No protein
-
NUP54-229
ENST00000695557
2272
No protein
-
NUP54-222
ENST00000695550
1943
102aa
ENSP00000512006
NUP54-221
ENST00000695549
2411
380aa
ENSP00000512005
NUP54-227
ENST00000695555
1468
84aa
ENSP00000512013
NUP54-223
ENST00000695551
2151
243aa
ENSP00000512007
NUP54-228
ENST00000695556
2156
303aa
ENSP00000512014
NUP54-216
ENST00000514987
1949
459aa
ENSP00000421304
NUP54-224
ENST00000695552
4226
289aa
ENSP00000512010
NUP54-202
ENST00000502850
1604
138aa
ENSP00000426609
NUP54-206
ENST00000508465
1809
438aa
ENSP00000512008
NUP54-211
ENST00000512151
1385
102aa
ENSP00000424172
NUP54-212
ENST00000513248
531
No protein
-
NUP54-203
ENST00000504173
314
No protein
-
NUP54-214
ENST00000514307
566
No protein
-
NUP54-207
ENST00000508583
633
No protein
-
NUP54-204
ENST00000506098
548
No protein
-
NUP54-210
ENST00000510884
441
No protein
-
NUP54-213
ENST00000513352
579
84aa
ENSP00000424389
Pathway ID
Pathway Name
Source
ensgID
Trait
pValue
Pubmed ID
ensgID SNP Chromosome Position
Trait PubmedID Or or BEAT
EFO ID
Protein-Protein Interaction (PPI)
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Ensembl ID
Source
Target
Species
Protein ID
Perc_pos
Perc_id
Species
Protein ID
Perc_pos
Perc_id
Go ID
Go term
No. evidence
Entries
Species
Category
GO:0005515 enables protein binding 1 IPI Homo_sapiens(9606) Function GO:0005635 located_in nuclear envelope 2 IDA,TAS Homo_sapiens(9606) Component GO:0005643 part_of nuclear pore 1 NAS Homo_sapiens(9606) Component GO:0006605 involved_in protein targeting 1 IEA Homo_sapiens(9606) Process GO:0006607 involved_in NLS-bearing protein import into nucleus 1 IBA Homo_sapiens(9606) Process GO:0006913 involved_in nucleocytoplasmic transport 1 NAS Homo_sapiens(9606) Process GO:0006999 involved_in nuclear pore organization 1 IBA Homo_sapiens(9606) Process GO:0017056 enables structural constituent of nuclear pore 1 IBA Homo_sapiens(9606) Function GO:0031965 located_in nuclear membrane 1 IEA Homo_sapiens(9606) Component GO:0036228 involved_in protein localization to nuclear inner membrane 1 IBA Homo_sapiens(9606) Process GO:0042306 involved_in regulation of protein import into nucleus 1 IEA Homo_sapiens(9606) Process GO:0042802 enables identical protein binding 1 IEA Homo_sapiens(9606) Function GO:0044613 part_of nuclear pore central transport channel 1 IBA Homo_sapiens(9606) Component GO:0044877 enables protein-containing complex binding 1 IEA Homo_sapiens(9606) Function GO:0051028 involved_in mRNA transport 1 IEA Homo_sapiens(9606) Process
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