Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases N.A.
Drug N.A.
Main interacting RNAs N.A.
Moonlighting functions Metabolic enzyme
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000138750 Gene ID 53371 Accession 17359
Symbol NUP54 Alias DYT37 Full Name nucleoporin 54
Status Confidence Length 40924 bases Strand Minus strand
Position 4 : 76107562 - 76148485 RNA binding domain N.A.
Summary The nuclear envelope creates distinct nuclear and cytoplasmic compartments in eukaryotic cells. It consists of two concentric membranes perforated by nuclear pores, large protein complexes that form aqueous channels to regulate the flow of macromolecules between the nucleus and the cytoplasm. These complexes are composed of at least 100 different polypeptide subunits, many of which belong to the nucleoporin family. This gene encodes a member of the phe-gly (FG) repeat-containing nucleoporin subset. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jun 2013]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
NUP54-218 ENST00000695546 6815 138aa ENSP00000512003
NUP54-219 ENST00000695547 4320 561aa ENSP00000512004
NUP54-208 ENST00000508604 1671 No protein -
NUP54-209 ENST00000510569 2754 No protein -
NUP54-201 ENST00000264883 2249 507aa ENSP00000264883
NUP54-205 ENST00000507257 2002 102aa ENSP00000425243
NUP54-217 ENST00000515460 2413 327aa ENSP00000512009
NUP54-225 ENST00000695553 2552 83aa ENSP00000512011
NUP54-226 ENST00000695554 1917 253aa ENSP00000512012
NUP54-220 ENST00000695548 2234 No protein -
NUP54-215 ENST00000514313 4547 No protein -
NUP54-229 ENST00000695557 2272 No protein -
NUP54-222 ENST00000695550 1943 102aa ENSP00000512006
NUP54-221 ENST00000695549 2411 380aa ENSP00000512005
NUP54-227 ENST00000695555 1468 84aa ENSP00000512013
NUP54-223 ENST00000695551 2151 243aa ENSP00000512007
NUP54-228 ENST00000695556 2156 303aa ENSP00000512014
NUP54-216 ENST00000514987 1949 459aa ENSP00000421304
NUP54-224 ENST00000695552 4226 289aa ENSP00000512010
NUP54-202 ENST00000502850 1604 138aa ENSP00000426609
NUP54-206 ENST00000508465 1809 438aa ENSP00000512008
NUP54-211 ENST00000512151 1385 102aa ENSP00000424172
NUP54-212 ENST00000513248 531 No protein -
NUP54-203 ENST00000504173 314 No protein -
NUP54-214 ENST00000514307 566 No protein -
NUP54-207 ENST00000508583 633 No protein -
NUP54-204 ENST00000506098 548 No protein -
NUP54-210 ENST00000510884 441 No protein -
NUP54-213 ENST00000513352 579 84aa ENSP00000424389

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0005515enables protein binding1IPIHomo_sapiens(9606)Function
GO:0005635located_in nuclear envelope2IDA,TASHomo_sapiens(9606)Component
GO:0005643part_of nuclear pore1NASHomo_sapiens(9606)Component
GO:0006605involved_in protein targeting1IEAHomo_sapiens(9606)Process
GO:0006607involved_in NLS-bearing protein import into nucleus1IBAHomo_sapiens(9606)Process
GO:0006913involved_in nucleocytoplasmic transport1NASHomo_sapiens(9606)Process
GO:0006999involved_in nuclear pore organization1IBAHomo_sapiens(9606)Process
GO:0017056enables structural constituent of nuclear pore1IBAHomo_sapiens(9606)Function
GO:0031965located_in nuclear membrane1IEAHomo_sapiens(9606)Component
GO:0036228involved_in protein localization to nuclear inner membrane1IBAHomo_sapiens(9606)Process
GO:0042306involved_in regulation of protein import into nucleus1IEAHomo_sapiens(9606)Process
GO:0042802enables identical protein binding1IEAHomo_sapiens(9606)Function
GO:0044613part_of nuclear pore central transport channel1IBAHomo_sapiens(9606)Component
GO:0044877enables protein-containing complex binding1IEAHomo_sapiens(9606)Function
GO:0051028involved_in mRNA transport1IEAHomo_sapiens(9606)Process

Expression