Functions and Diseases

RBP Type Non-canonical_RBPs
Diseases Disease
Drug Drug
Main interacting RNAs N.A.
Moonlighting functions Kinase
Localizations N.A.
BulkPerturb-seq

Description

Ensembl ID ENSG00000137948 Gene ID 676 Accession 1105
Symbol BRDT Alias CT9;BRD6;SPGF21 Full Name bromodomain testis associated
Status Confidence Length 65084 bases Strand Plus strand
Position 1 : 91949343 - 92014426 RNA binding domain N.A.
Summary BRDT is similar to the RING3 protein family. It possesses 2 bromodomain motifs and a PEST sequence (a cluster of proline, glutamic acid, serine, and threonine residues), characteristic of proteins that undergo rapid intracellular degradation. The bromodomain is found in proteins that regulate transcription. Several transcript variants encoding multiple isoforms have been found for this gene. [provided by RefSeq, Jun 2011]

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal
30558232 Targeting the Oncoprotein Smoothened by Small Molecules: Focus on Novel Acylguanidine Derivatives as Potent Smoothened Inhibitors. Silvia Pietrobono 2018-12-14 Cells
33469999 Genome-wide chromatin occupancy of BRDT and gene expression analysis suggest transcriptional partners and specific epigenetic landscapes that regulate gene expression during spermatogenesis. Ra Yoon Her 2021-02-01 Molecular reproduction and development

Transcripts

Name Transcript ID bp Protein Translation ID
BRDT-211 ENST00000448194 1482 238aa ENSP00000410587
BRDT-216 ENST00000470955 998 71aa ENSP00000506247
BRDT-202 ENST00000362005 3409 947aa ENSP00000354568
BRDT-203 ENST00000370389 3696 874aa ENSP00000359416
BRDT-204 ENST00000394530 3207 901aa ENSP00000378038
BRDT-207 ENST00000423434 760 176aa ENSP00000396351
BRDT-210 ENST00000440509 788 200aa ENSP00000416714
BRDT-208 ENST00000426141 1530 462aa ENSP00000404969
BRDT-215 ENST00000461218 567 No protein -
BRDT-217 ENST00000476711 579 No protein -
BRDT-212 ENST00000449584 550 52aa ENSP00000408625
BRDT-209 ENST00000427104 1363 155aa ENSP00000400002
BRDT-201 ENST00000355011 534 14aa ENSP00000400199
BRDT-205 ENST00000399546 3310 947aa ENSP00000387822
BRDT-219 ENST00000484833 585 No protein -
BRDT-213 ENST00000450792 559 96aa ENSP00000414349
BRDT-220 ENST00000548992 569 100aa ENSP00000447394
BRDT-221 ENST00000552654 578 63aa ENSP00000446599
BRDT-214 ENST00000457265 551 31aa ENSP00000408138
BRDT-206 ENST00000402388 3125 947aa ENSP00000384051
BRDT-224 ENST00000680541 1153 345aa ENSP00000505035
BRDT-222 ENST00000680091 1563 475aa ENSP00000506227
BRDT-218 ENST00000484781 604 No protein -
BRDT-223 ENST00000680194 1001 251aa ENSP00000506530

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id

Gene Ontology

Go ID Go term No. evidence Entries Species Category
GO:0003713enables transcription coactivator activity1TASHomo_sapiens(9606)Function
GO:0005634located_in nucleus2IDA,ISSHomo_sapiens(9606)Component
GO:0006338involved_in chromatin remodeling1ISSHomo_sapiens(9606)Process
GO:0006355involved_in regulation of DNA-templated transcription1IMPHomo_sapiens(9606)Process
GO:0006397involved_in mRNA processing1IEAHomo_sapiens(9606)Process
GO:0007140involved_in male meiotic nuclear division1ISSHomo_sapiens(9606)Process
GO:0007141involved_in male meiosis I1ISSHomo_sapiens(9606)Process
GO:0008380involved_in RNA splicing1IEAHomo_sapiens(9606)Process
GO:0035092involved_in sperm DNA condensation1ISSHomo_sapiens(9606)Process
GO:0042393enables histone binding1IDAHomo_sapiens(9606)Function
GO:0043484involved_in regulation of RNA splicing1ISSHomo_sapiens(9606)Process
GO:0051039involved_in positive regulation of transcription involved in meiotic cell cycle1ISSHomo_sapiens(9606)Process
GO:0070577enables lysine-acetylated histone binding1ISSHomo_sapiens(9606)Function
GO:0140566enables histone reader activity1ISSHomo_sapiens(9606)Function

Expression