RBPWorld - a comprehensive database of RNA Binding Proteins

Functions and Diseases

RBP Type	Canonical_RBPs
Diseases	Cancer
Drug	N.A.
Main interacting RNAs	ncRNA
Moonlighting functions	N.A.
Localizations	N.A.
BulkPerturb-seq	N.A.

Description

Ensembl ID	ENSG00000137628	Gene ID	55601	Accession	25942
Symbol	DDX60	Alias		Full Name
Status	Confidence	Length	102593 bases	Strand	Minus strand
Position	4 : 168216291 - 168318883	RNA binding domain	ResIII , DEAD
Summary

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSP00000377344	DEAD	PF00270	9e-17	1
ENSP00000377344	ResIII	PF04851	3.6e-12	2
ENSP00000505292	DEAD	PF00270	8.8e-17	1
ENSP00000505292	ResIII	PF04851	3.5e-12	2
ENSP00000506501	DEAD	PF00270	6.3e-17	1
ENSP00000506501	ResIII	PF04851	1.8e-12	2

Showing 1 to 6 of 6 entries

RNA binding proteomes (RBPomes)

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Pubmed ID	Full Name	Cell	Author	Time	Doi
30352994	eRIC_PMID30352994_Jurkat_human	Jurkat	Joel I Perez-Perri?	2018 Oct 23	doi: 10.1038/s41467-018-06557-8
34471108	RIC_PMID34471108_human		Kai P Hoefig	2021 Sep 1	doi: 10.1038/s41467-021-25345-5.
37421941	RIC_PMID37421941_Hydra10_human		Wenhao Jin	2023 Jul 20	doi: 10.1016/j.molcel.2023.06.019.?Epub 2023 Jul 7

Showing 1 to 3 of 3 entries

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Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
DDX60-201	ENST00000393743	6015	1712aa	ENSP00000377344
DDX60-202	ENST00000505393	745	No protein	-
DDX60-203	ENST00000507815	548	No protein	-
DDX60-204	ENST00000511317	4877	191aa	ENSP00000422669
DDX60-205	ENST00000513997	542	104aa	ENSP00000423678
DDX60-206	ENST00000514995	537	119aa	ENSP00000423647
DDX60-207	ENST00000679510	6267	1392aa	ENSP00000506501
DDX60-208	ENST00000679744	6135	No protein	-
DDX60-209	ENST00000680771	6718	1682aa	ENSP00000505292
DDX60-210	ENST00000680917	6641	249aa	ENSP00000505790

Showing 1 to 10 of 12 entries

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Gene Model

Click here to download ENSG00000137628's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSG00000137628's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000137628	homo_sapiens	ENSP00000264233	12.8185	6.67954	homo_sapiens	ENSP00000377344	19.3925	10.1051
ENSG00000137628	homo_sapiens	ENSP00000364543	27.2873	15.008	homo_sapiens	ENSP00000377344	19.8598	10.9229
ENSG00000137628	homo_sapiens	ENSP00000507872	79.1325	65.7093	homo_sapiens	ENSP00000377344	78.8551	65.479
ENSG00000137628	homo_sapiens	ENSP00000317123	17.603	8.42697	homo_sapiens	ENSP00000377344	21.9626	10.514
ENSG00000137628	homo_sapiens	ENSP00000359454	22.9268	11.2195	homo_sapiens	ENSP00000377344	19.2173	9.40421
ENSG00000137628	homo_sapiens	ENSP00000295488	32.4251	16.9846	homo_sapiens	ENSP00000377344	20.8528	10.9229
ENSG00000137628	homo_sapiens	ENSP00000358159	17.7566	8.58311	homo_sapiens	ENSP00000377344	22.8388	11.0397
ENSG00000137628	homo_sapiens	ENSP00000230640	26.9674	14.3954	homo_sapiens	ENSP00000377344	16.4136	8.76168

Showing 1 to 8 of 8 entries

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Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSG00000137628	homo_sapiens	ENSP00000377344	97.5467	96.2033	nomascus_leucogenys	ENSNLEP00000007983	98.2353	96.8824
ENSG00000137628	homo_sapiens	ENSP00000377344	69.3341	68.8668	pan_paniscus	ENSPPAP00000034843	98.9167	98.25
ENSG00000137628	homo_sapiens	ENSP00000377344	98.4229	97.3131	pongo_abelii	ENSPPYP00000016966	98.4229	97.3131
ENSG00000137628	homo_sapiens	ENSP00000377344	99.4743	99.1238	pan_troglodytes	ENSPTRP00000028456	99.4743	99.1238
ENSG00000137628	homo_sapiens	ENSP00000377344	93.5748	93.1075	gorilla_gorilla	ENSGGOP00000012509	99.5031	99.0062
ENSG00000137628	homo_sapiens	ENSP00000377344	75.3505	61.7407	ornithorhynchus_anatinus	ENSOANP00000053223	75.4386	61.8129
ENSG00000137628	homo_sapiens	ENSP00000377344	78.1542	63.3178	sarcophilus_harrisii	ENSSHAP00000019105	78.3372	63.466
ENSG00000137628	homo_sapiens	ENSP00000377344	33.8201	26.8692	notamacropus_eugenii	ENSMEUP00000004766	41.3571	32.8571
ENSG00000137628	homo_sapiens	ENSP00000377344	67.8738	59.1706	choloepus_hoffmanni	ENSCHOP00000009434	75.5527	65.8648
ENSG00000137628	homo_sapiens	ENSP00000377344	87.5	77.979	dasypus_novemcinctus	ENSDNOP00000006568	87.5	77.979

Showing 1 to 10 of 115 entries

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Gene Ontology

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Go ID	Go term	No. evidence	Entries	Species	Category
GO:0003725	enables double-stranded RNA binding	2	IBA,IDA	Homo_sapiens(9606)	Function
GO:0003727	enables single-stranded RNA binding	2	IBA,IDA	Homo_sapiens(9606)	Function
GO:0005737	is_active_in cytoplasm	2	IBA,IDA	Homo_sapiens(9606)	Component
GO:0003690	enables double-stranded DNA binding	1	IDA	Homo_sapiens(9606)	Function
GO:0003724	enables RNA helicase activity	1	IEA	Homo_sapiens(9606)	Function
GO:0005515	enables protein binding	1	IPI	Homo_sapiens(9606)	Function
GO:0005524	enables ATP binding	1	IEA	Homo_sapiens(9606)	Function
GO:0005829	located_in cytosol	1	IDA	Homo_sapiens(9606)	Component
GO:0009615	involved_in response to virus	1	IDA	Homo_sapiens(9606)	Process
GO:0016887	enables ATP hydrolysis activity	1	IEA	Homo_sapiens(9606)	Function

Showing 1 to 10 of 15 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression